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This is perhaps a slightly different type of milder error to those I've previously reported...
This Plazi-mediated dataset on GBIF: https://www.gbif.org/dataset/1e2bcc49-86c8-4612-a4eb-d9bdce9785ef…
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As you said, you want to find HGTs from "Non Metazoa" species to your species
Your example:
Ingroup:
33208: Metazoa
EGP:
6300: Tylenchida
i check that "Metazoa" ranks "kingdom" with "Tylenchid…
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Hello,
I am trying to work through the pipeline, but it appears to be getting stuck somewhere during VSEARCH. I ran the following code and got this message:
snakemake --jobs 20 --snakefile snake…
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Dear biomaRt team,
I ran the following code and encountered an error message.
Trying other mirror sites didn't resolve the issue.
Could you please advise on how to handle this error?
```
li…
Kan-E updated
1 month ago
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Please provide as much information as you can:
GO:0043073 germ cell nucleus
The nucleus of a germ cell, a reproductive cell in multicellular organisms.
* **Request to add a taxon constraint:*…
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Memory cost is too high to run repeatmasker (80G ram cost per parallel job)
![image](https://github.com/rmhubley/RepeatMasker/assets/37610359/5cd5d95c-4758-46d0-8b86-d7bcc28a8638)
command line
…
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### Contact details
franckl@uio.no
### Dataset Title
Global deep-sea benthic Metazoa V1V2 metabarcoding dataset
### Describe your dataset and any specific challenges or blockers you have or antici…
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- Consistently update set of reference transcripts for library source inference and include more genes for better accuracy
- Include organisms/sources from all clades in Ensembl: Bacteria, Plants, Fu…
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The `precheck_TransPi.sh` script fails to download the UniProt Metazoa database due to changes to the API.
This is what comes back from the download command:
```
$ curl -o uniprot_metazoa_33208.fas…
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- [ ] https://github.com/obophenotype/upheno (not possible due to https://github.com/obophenotype/upheno/issues/919)
- [ ] https://monarchinitiative.org/ (not possible due to https://github.com/monar…