-
Alban a écrit:
> library(vegan)
> adonis2(table_trnscripto ~ sample.ID*time+Depth.sequencing, data = metadata)
>
> Sort ca:
>
> - Df (degrés de liberté) :
> - SumOfSqs (somme des carrés) :…
-
**Improvement Description**
Just wondering if there are plan to implement the two methods below. They can also be used for longitudinal microbiome analysis with a given distance matrix.
**Referen…
-
Hi all, having some trouble getting my head around permanova/adonis. Would really appreciate
Had a request from a reviewer - "could the authors run a PERMANOVA to check what factors have an effect…
-
Perhaps I'm missing this, or it is statistically inappropriate but:
Is there some sort of AOV table returned from `skbio.stats.distance.permanova` ? I'm specifically looking for some sort of varian…
-
Hey @gregcaporaso
I wanted to ask if all DEICODE transformed data meet the main assumption for PERMANOVA?
[https://stackoverflow.com/questions/35410860/permanova-multivariate-spread-among-groups…
-
It would be nice to be able to do two-factor permanova in qiime (compare_categories.py). Right now you have to take your data matrix to R or Primer in order to determine any interaction between your …
-
I am trying to do the statistical tests for soil microbiome data with an unbalanced sample size among groups.
I have also seen two packages in R (PERMANOVA and recently RRPP) to test differences b…
-
Hi:
I saw in closed issue #317 that "vegan does not have nested PERMANOVA". Would it be possible to implement this feature, or is it something that just won't be implemented?
Pedro
-
Hi,
I don't understand why I got a different result (p-value) when I use phyloseq to calculate a distance matrix? I hope somebody can explain it to me..
metadata
-
maybe just good old fashioned PERMANOVA.jl
Easier for people to find, much as I enjoy the imagery of The Hydra