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Alban a écrit:
> library(vegan)
> adonis2(table_trnscripto ~ sample.ID*time+Depth.sequencing, data = metadata)
>
> Sort ca:
>
> - Df (degrés de liberté) :
> - SumOfSqs (somme des carrés) :…
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**Improvement Description**
Just wondering if there are plan to implement the two methods below. They can also be used for longitudinal microbiome analysis with a given distance matrix.
**Referen…
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Hi all, having some trouble getting my head around permanova/adonis. Would really appreciate
Had a request from a reviewer - "could the authors run a PERMANOVA to check what factors have an effect…
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Perhaps I'm missing this, or it is statistically inappropriate but:
Is there some sort of AOV table returned from `skbio.stats.distance.permanova` ? I'm specifically looking for some sort of varian…
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It would be nice to be able to do two-factor permanova in qiime (compare_categories.py). Right now you have to take your data matrix to R or Primer in order to determine any interaction between your …
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Hey @gregcaporaso
I wanted to ask if all DEICODE transformed data meet the main assumption for PERMANOVA?
[https://stackoverflow.com/questions/35410860/permanova-multivariate-spread-among-groups…
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I am trying to do the statistical tests for soil microbiome data with an unbalanced sample size among groups.
I have also seen two packages in R (PERMANOVA and recently RRPP) to test differences b…
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Hi:
I saw in closed issue #317 that "vegan does not have nested PERMANOVA". Would it be possible to implement this feature, or is it something that just won't be implemented?
Pedro
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Hi,
I don't understand why I got a different result (p-value) when I use phyloseq to calculate a distance matrix? I hope somebody can explain it to me..
metadata
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Permanova and anosim require that every ID in the distance matrix appear in the grouped data. The current implementation means that when ids are omitted because they have undefined metadata, the Categ…