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AlexsLemonade
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scpca-docs
User information about ScPCA processing
https://scpca.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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Add anndata download images to download section
#161
allyhawkins
closed
1 year ago
0
Update SCE contents section to include cell type annotation
#160
allyhawkins
closed
11 months ago
1
Update download section to include supplemental cell type file
#159
allyhawkins
closed
11 months ago
1
Make BioC links consistent
#158
sjspielman
opened
1 year ago
5
Description of AnnData contents
#157
allyhawkins
closed
1 year ago
5
Update cluster column name
#156
sjspielman
closed
1 year ago
0
Add "How to Cite" section to the docs
#155
dvenprasad
closed
11 months ago
2
Include description of sample metadata present in SCE object
#154
allyhawkins
closed
1 year ago
1
Document AnnData in downloads
#153
allyhawkins
closed
1 year ago
0
Illustration for expected download of sample with CITE-seq as AnnData
#152
allyhawkins
closed
1 year ago
3
Illustrations for AnnData sample downloads
#151
allyhawkins
closed
1 year ago
3
Illustration for AnnData project download
#150
allyhawkins
closed
1 year ago
3
Add FAQ for how to use downloaded hdf5 files
#149
allyhawkins
closed
1 year ago
1
Account for AnnData in getting started with an ScPCA dataset
#148
allyhawkins
closed
1 year ago
1
Update FAQ on working with python
#147
allyhawkins
closed
1 year ago
1
Update components of SCE section to include added metadata fields
#146
allyhawkins
closed
1 year ago
1
Document contents of AnnData objects
#145
allyhawkins
closed
1 year ago
3
Add AnnData to download section
#144
allyhawkins
closed
1 year ago
3
Add FAQ about samples/libraries getting removed
#143
jaclyn-taroni
closed
9 months ago
0
Update processing to reflect we always use unspliced now
#142
jashapiro
closed
11 months ago
0
Update config file
#141
sjspielman
closed
1 year ago
2
Add documentation for celltype annotation
#134
sjspielman
closed
1 year ago
7
Document celltype_methods metadata field
#133
sjspielman
closed
1 year ago
1
Add FAQ directing users to look at the change logs
#132
allyhawkins
closed
11 months ago
0
Initialize CHANGELOG
#131
allyhawkins
closed
11 months ago
2
Document cell type annotations
#130
allyhawkins
closed
1 year ago
3
Add docs for clustering
#129
sjspielman
closed
1 year ago
1
Update docs with clustering
#128
sjspielman
closed
1 year ago
1
Document AnnData portal downloads
#127
allyhawkins
closed
1 year ago
1
Merge in `development` for post-processed CITEseq data
#126
sjspielman
closed
1 year ago
0
Update ADT filtering sections
#125
sjspielman
closed
1 year ago
3
update ADT filtering docs
#124
sjspielman
closed
1 year ago
1
Little docs fixes
#123
sjspielman
closed
1 year ago
0
Fix some broken ref links in docs
#122
sjspielman
closed
1 year ago
2
Updates for ADT normalization
#121
sjspielman
closed
1 year ago
0
Update ADT normalization docs
#120
sjspielman
closed
1 year ago
2
Add `highly_variable_adts` to docs
#119
sjspielman
closed
1 year ago
1
Publish docs that reflect ADT post-processing
#118
jaclyn-taroni
closed
1 year ago
0
Revamp `getting_started` docs to not repeat analyses
#117
sjspielman
closed
1 year ago
2
Update SCE <-> Seurat faq section
#116
sjspielman
opened
1 year ago
0
Update `getting_started` with ADT post-processing
#115
sjspielman
closed
1 year ago
6
Update docs: no ADT filtering & ADT modality
#114
sjspielman
closed
1 year ago
1
Update docs about how users can filter ADTs
#113
sjspielman
closed
1 year ago
1
Update docs to reflect lack of ADT filtering
#112
sjspielman
closed
1 year ago
2
Note that bulk data is no longer required for multiplexing!
#111
jashapiro
closed
8 months ago
7
Add CITE post-processing to docs
#110
sjspielman
closed
1 year ago
3
Adding changes to participant ID to main branch
#109
allyhawkins
closed
1 year ago
0
Document changes to participant ID requirements
#108
allyhawkins
closed
1 year ago
0
Tweak FAQ and downloaded files section for participant IDs to allow for future additions
#107
jaclyn-taroni
closed
1 year ago
1
Include CITE-seq processing in docs
#106
sjspielman
closed
1 year ago
4
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