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AppliedBioinformatics
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runBNG
An easy way to run BioNano genomic analysis
MIT License
27
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7
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Can runBNG run bionano on a local machine?
#41
AntetokounmJie
closed
1 year ago
0
Irys data with splitbnx error
#40
Johnsonzcode
opened
1 year ago
0
runBNG de novo issue when using a reference cmap
#39
marialui
opened
1 year ago
0
OSError: [Errno 2] No such file or directory when running runBNG denovo on the example data
#38
0xaf1f
opened
2 years ago
0
What's the problem of my runBNG compare?
#37
Julia-zhulinying
opened
2 years ago
1
runBNG compare does not generate .xmap, _q.cmap and _r.cmap
#36
Julia-zhulinying
opened
2 years ago
0
Missing module of pybionano.smapdata
#35
liangwx332
opened
2 years ago
2
Does runBNG now requires docker?
#34
ryao-mdanderson
opened
2 years ago
8
compile runBNG
#33
clsgithubusr
opened
2 years ago
1
Invalid xml file : optArguments_new.xml
#32
stephrom
opened
3 years ago
1
ERROR: Contig count 0 <= Assembly minimum 0, exiting. When running denovo
#31
cdmmoeller
opened
3 years ago
6
error cannot open auto_noise
#30
olechnwin
closed
3 years ago
9
runBNG: line 1752: bionano/tools/pipeline/Solve3.6.1_11162020/RefAligner/11442.11643rel: Is a directory
#29
olechnwin
closed
3 years ago
2
AttributeError: 'NoneType' object has no attribute 'endswith'
#28
olechnwin
closed
3 years ago
2
ERROR: sortBNX failed
#27
xiaoquexingchen
closed
3 years ago
17
ERROR: Invalid xml file /root/runBNG-master/Examples/optArguments_new.xml: StartTag: invalid element name, line 115, column 10 #26
#26
Missandei-hcl
closed
3 years ago
8
ERROR: no align files in alignFolder
#25
olechnwin
closed
3 years ago
8
runBNG can't be run with python3
#24
yzhang18
closed
3 years ago
5
error: input Bionano Solve folder is not the original folder
#23
olechnwin
closed
3 years ago
7
How to get bionano Assembler
#22
xiaoquexingchen
opened
3 years ago
4
no align files in alignFolder
#21
wangzhennan14
closed
3 years ago
8
no align files in alignFolder
#20
wangzhennan14
closed
3 years ago
0
UnsubmittedJobs Problem while running 'runBNG denovo'
#19
onkar2470
closed
3 years ago
4
URLs to BioNano software are outdated
#18
a-ludi
closed
3 years ago
1
Can I run runBNG on a system with glibc-2.14?
#17
wangzhennan14
closed
3 years ago
1
Hybrid_scaffolds assembly issue
#16
Sparkle-27
closed
5 years ago
11
Re-run from breaking point
#15
liu-xingliang
closed
5 years ago
2
runBNG denovo: "ERROR: no align files in alignFolder"
#14
liu-xingliang
closed
5 years ago
11
Raw molecules input (although it's mentioned in #7)
#13
liu-xingliang
closed
5 years ago
2
hybrid scaffolding, -f final assembled cmap file
#12
liu-xingliang
closed
5 years ago
7
Can runBNG correct the inner contig error with hybrid assembly pipeline？
#11
Mr-Inamn
closed
3 years ago
1
segmentation fault with hybridScaffold.pl
#10
JennyHTLee
closed
3 years ago
6
max and min avgintensity in bnxstats
#9
JennyHTLee
closed
6 years ago
1
sortBNX failed
#8
MikeEHMatson
opened
6 years ago
10
Raw molecules input
#7
ZihuaLiu666
closed
6 years ago
3
Question about BioNano RefAligner
#6
ZihuaLiu666
closed
6 years ago
1
Error in bnxSort Step
#5
GWheelerEB
closed
6 years ago
2
runBNG SV
#4
kkuonjj
closed
6 years ago
1
examples & where to store BioNano scripts/tools
#3
liuqianhn
closed
6 years ago
4
the enzyme of demo data
#2
chaijingchao123
closed
6 years ago
1
Enzymes
#1
yyx8671
closed
3 years ago
3