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Bioconductor
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GenomicDataCommons
Provide R access to the NCI Genomic Data Commons portal.
http://bioconductor.github.io/GenomicDataCommons/
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GenomicDataCommons::status() error, when other connections seem fine.
#66
RichardJActon
closed
5 years ago
1
GenomicDataCommons::status()
#65
renhuasong
closed
5 years ago
2
How to download data using only the samples have normal samples.
#64
bioinfo-dirty-jobs
opened
5 years ago
0
available_rna_seq_workflow returns NULL
#63
robin073
opened
5 years ago
0
gdc_rnaseq.R: gdc_rnaseq() on workflows other than "HTSeq - Counts" produce errors
#62
lyijin
opened
6 years ago
2
gdc_rnaseq.R: available_rnaseq_workflows() returns NULL
#61
lyijin
opened
6 years ago
0
outdated API link
#60
aninguyen
closed
6 years ago
7
SSL certificate expiry
#59
adamp83
closed
6 years ago
5
extract from ID case the ID files
#58
bioinfo-dirty-jobs
closed
6 years ago
2
TCGAtranslateID issue
#57
cherlynty
closed
6 years ago
4
error on download MAF files
#56
bioinfo-dirty-jobs
closed
6 years ago
1
download data from uidd
#55
bioinfo-dirty-jobs
closed
6 years ago
3
Error: lexical error: invalid char in json text.
#54
bioinfo-dirty-jobs
closed
6 years ago
1
Error when downloading files
#53
cherlynty
closed
6 years ago
5
extract clinical data from previous research
#52
bioinfo-dirty-jobs
opened
6 years ago
4
slicing fails on multiple regions
#51
tischfis
closed
1 year ago
3
Check and retry request with 429 errors
#50
seandavi
opened
6 years ago
0
404 when using legacy=TRUE
#49
fpbarthel
closed
6 years ago
14
Proposal for caching behavior--comments.
#48
seandavi
closed
6 years ago
5
expand for deeply-nested fields
#47
brisk022
opened
6 years ago
2
GDC server down, try to use this package later
#46
JessieLIII
closed
6 years ago
2
File caching behavior and implementation
#45
seandavi
closed
6 years ago
0
shiny dependency
#44
lawremi
closed
7 years ago
1
command failed
#43
changiseng
closed
7 years ago
2
update several files, closes #41
#42
LiNk-NY
closed
7 years ago
1
magrittr in Depends field
#41
LiNk-NY
closed
7 years ago
2
Higher-level functionality than just data access using GenomicDataCommons package
#40
igordot
closed
6 years ago
19
token is not required for gdcdata call in vignette 2.4
#39
vjcitn
closed
7 years ago
1
Catch ssl handshake error and suggest fix
#38
seandavi
opened
7 years ago
0
Problem connecting to gdc
#37
sowmyaiyer
closed
7 years ago
8
Add `legacy()` method on `GDCQuery`
#36
seandavi
closed
2 years ago
1
guidance on solving SSL error?
#35
vjcitn
closed
7 years ago
16
Possibility to add push hook for bioc build
#34
seandavi
closed
7 years ago
1
Implement ids() for GDCFileResults and GDCCasesResults
#33
seandavi
closed
7 years ago
0
Link README.md to a vignette
#32
mtmorgan
closed
7 years ago
1
Windows install
#31
hsahni
closed
7 years ago
2
Manifest won't generate for larger groups of files
#30
wwysoc2
closed
7 years ago
2
file_id not recognized as field for file endpoint.
#29
wwysoc2
closed
7 years ago
2
_mapping "expand" fix
#28
seandavi
closed
7 years ago
1
facets and filters not working when specified together.
#27
seandavi
opened
7 years ago
1
Need to return more complex object to support counting hits and facets
#26
seandavi
closed
7 years ago
4
quick start code does not run
#25
vjcitn
closed
7 years ago
0
'filters' not defined
#24
vjcitn
closed
7 years ago
1
Add gdcmanifest() endpoint
#23
seandavi
closed
7 years ago
1
Add gdcdata() endpoint.
#22
seandavi
closed
7 years ago
0
link in README for GDC authz/authn is broken
#21
ttriche
closed
7 years ago
1
Proposed new name
#20
seandavi
closed
7 years ago
1
Error in named(list(...)) : could not find function "progress"
#19
ttriche
closed
7 years ago
1
.gdc_list print output might be a bit misleading
#18
seandavi
closed
7 years ago
1
_mapping is best represented as a data.frame
#17
seandavi
closed
7 years ago
0
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