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Clinical-Genomics-Lund
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nextflow_wgs
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Update Gnomad
#148
Jakob37
closed
8 months ago
4
Run output diff script
#147
Jakob37
closed
8 months ago
0
Add version to genmod container name + move out of main.nf
#146
alkc
opened
9 months ago
1
Remove some old docs and rearrange repo to use new docs by default
#145
Jakob37
closed
9 months ago
0
Update fastp to 0.23.4
#144
alkc
closed
8 months ago
6
Update fastp version for speedup and reproducibility
#143
Jakob37
closed
6 months ago
2
Verification
#142
Jakob37
closed
6 months ago
2
Add software responsible to docs
#141
Jakob37
closed
9 months ago
0
Mito `GT` field mangled when breaking up multis
#140
alkc
opened
9 months ago
0
Set target scout institute in create_yaml through param
#139
alkc
opened
9 months ago
0
Can mutect2 be dropped in favor of sentieon only?
#138
alkc
closed
9 months ago
1
Bam entry point does not run DNAScope if ID != group
#137
Jakob37
closed
2 months ago
0
Add D4 coverage calculations
#136
Jakob37
closed
7 months ago
0
gzip the world (where applicable)
#135
alkc
opened
9 months ago
2
Document `split_normalize_mito` process
#134
alkc
opened
9 months ago
0
Add GQ field to mutect2 called VCF to facilitate loqusdb import
#133
ViktorHy
closed
4 months ago
0
Upgrade to VEP 111.0
#132
alkc
closed
7 months ago
16
Sentieon update
#131
Jakob37
closed
9 months ago
3
Update intersect file
#130
Jakob37
closed
9 months ago
4
Add changelog reminder github workflow
#129
alkc
closed
9 months ago
0
Update Sentieon to 2023 version (or check that the results are identical) - Latest February
#128
Jakob37
closed
6 months ago
0
Documentation into ReadTheDocs
#127
Jakob37
opened
9 months ago
0
Clean up in wgs versions
#126
Jakob37
closed
8 months ago
0
Added the latest variant_catalog
#125
A97paupic
closed
9 months ago
1
Update Gnomad SV version
#124
Jakob37
opened
9 months ago
0
Update the intersect bed file (deadline February)
#123
Jakob37
closed
6 months ago
0
Cleanup wgs documentation
#122
Jakob37
closed
9 months ago
0
Issue with LoqusDB representation of DUP/TANDEMDUP
#121
Jakob37
opened
10 months ago
0
Curate loqusdb from tiddit TDUPs
#120
ViktorHy
opened
10 months ago
0
Melt exome priors ignorecontigs
#119
ViktorHy
closed
10 months ago
4
Update SVDB version
#118
Jakob37
opened
10 months ago
1
Add `documentation` to type of change section in PR template
#117
alkc
closed
10 months ago
1
Masked gens refpool
#116
ViktorHy
closed
10 months ago
1
Document the twistmyeloid container
#115
Jakob37
closed
8 months ago
0
Document the "annotate" binary
#114
Jakob37
closed
8 months ago
0
Further documentation updates
#113
Jakob37
closed
10 months ago
0
Remove `silly.lua` from vcfanno
#112
Jakob37
opened
10 months ago
0
Start versioning rank models
#111
Jakob37
opened
10 months ago
2
Clean up CNVnator from rank model
#110
Jakob37
opened
10 months ago
0
Either bring the Trannel config up to date, or remove it
#109
Jakob37
opened
10 months ago
0
Add PR type "documentation" to PR template
#108
alkc
closed
10 months ago
0
Make the process allocations respect the allocations as defined in the `nextflow.config`
#107
Jakob37
opened
11 months ago
0
Move out hard-coded resources
#106
Jakob37
closed
10 months ago
0
Jw/documentation
#105
Jakob37
closed
10 months ago
1
Provide all annotations through resources
#104
Jakob37
opened
11 months ago
0
Fix the CADD to use version 1.6 (or 1.7)
#103
Jakob37
closed
6 months ago
0
The `params.panelhs` takes code as arguments, which rather could be part of the pipeline itself
#102
Jakob37
opened
11 months ago
0
Remove unused arguments from the config
#101
Jakob37
opened
11 months ago
0
Provide containers through params
#100
Jakob37
opened
11 months ago
0
Write usage documentation
#99
Jakob37
closed
10 months ago
0
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