Clinical-Genomics loqusdbapi issues

Clinical-Genomics / loqusdbapi

A simple REST api for loqusdb

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issues

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Update setuptools to address package_index vulnerability

#52 northwestwitch closed 2 months ago
1
Update instructions on how to install this package since - poetry doesn't work as stated on README

#51 northwestwitch opened 2 months ago
0
Address security issue in setuptools < 70.0

#50 northwestwitch closed 2 months ago
0
Update issue templates

#49 dnil closed 3 months ago
0
Fix MT variants query for genome build 38

#48 northwestwitch closed 8 months ago
10
Fix gunicorn workers booting by modifying Dockerfile to use python bullseye

#45 northwestwitch closed 10 months ago
1
Docker base image causes gunicorn error

#44 northwestwitch closed 10 months ago
1
Fix docker release tag naming to make deploying easier

#43 northwestwitch closed 10 months ago
3
Update loqusdb version to >=2.7.3 in requirements

#42 northwestwitch closed 10 months ago
2
fuse-overlayfs use a lot of cpu using the latest version of the repo on podman cg-vm1

#41 northwestwitch closed 10 months ago
5
Push images with tag vx.x.x instead of x.x.x to Docker Hub

#40 northwestwitch closed 10 months ago
0
Fix PyYaml installation error

#39 northwestwitch closed 11 months ago
1
Deprecated config in `setup.cfg`

#38 northwestwitch closed 11 months ago
0
Unfreeze loqusdb and pymongo-related dependencies

#37 northwestwitch closed 11 months ago
1
unfreeze PyMongo

#36 northwestwitch closed 11 months ago
0
Add entrypoint for exporting variants in vcf format

#35 mhkc opened 2 years ago
0
Include sshfs in Docker image

#34 mhkc opened 2 years ago
0
Fix ports in docker-compose

#33 northwestwitch closed 2 years ago
1
docker-compose launches an app that is not reachable from outside the container

#32 northwestwitch closed 2 years ago
0
Tests

#31 dnil opened 2 years ago
0
Fix #28 - _id type

#30 dnil closed 2 years ago
4
Installation with poetry following readme instructions fails

#29 northwestwitch opened 2 years ago
0
Missing SV frequencies?

#28 dnil closed 2 years ago
4
Increase test coverage

#27 northwestwitch opened 2 years ago
1
Reintroduce total number of hits in Variant and SV Variant models

#26 northwestwitch closed 2 years ago
2
Problem retrieving totals with v0.1.4

#25 dnil closed 2 years ago
2
another way

#24 mayabrandi closed 2 years ago
1
Extend API to handle load

#23 Mropat closed 2 years ago
3
Add an endpoint to return loqusdbapi version

#22 northwestwitch opened 2 years ago
0
Fix mongo adapter timeout

#21 dnil closed 2 years ago
3
Load loqusdb data via api

#20 Mropat opened 2 years ago
0
loqusdbapi calls for SVs failed on scout-stage test?

#19 dnil closed 2 years ago
2
fix bump string

#18 Mropat closed 2 years ago
0
Vm ready package

#17 Mropat closed 2 years ago
0
Need export of loquesdb schema

#16 Mropat closed 2 years ago
2
Use MongoDB 4.4.9 in docker-compose

#15 northwestwitch closed 2 years ago
1
Change the Docker-compose and actions files to use a MongoDB version 4.4

#14 northwestwitch closed 2 years ago
0
Docker image not pushed to Docker Hub on release event

#13 northwestwitch closed 3 years ago
2
Add a CHANGELOG and prepare release 1.0

#12 northwestwitch closed 3 years ago
1
Starting using versioning for this repo?

#11 northwestwitch closed 3 years ago
0
Push image to Docker Hub prod and stage

#10 northwestwitch closed 3 years ago
9
Add the image of this repo to Docker hub

#9 northwestwitch closed 3 years ago
0
Rename "nr_cases" to "total" in returned variant info

#8 northwestwitch closed 3 years ago
1
Provide examples to query for SVs and cases in readme file

#7 northwestwitch closed 2 years ago
6
How do I send queries to the svs endpoint?

#6 northwestwitch closed 3 years ago
1
Endpoint returning number of cases with SNVs and SVs

#5 northwestwitch closed 3 years ago
4
The app returns an HTTP error when the variant is not found

#4 northwestwitch closed 3 years ago
10
Return loqusdb version info from / endpoint

#3 northwestwitch closed 3 years ago
2
Endpoint that returns loqusdb version?

#2 northwestwitch closed 3 years ago
3
Does the API support requests of variants by institute?

#1 northwestwitch closed 3 years ago
2