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DistributedScience
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Distributed-CellProfiler
Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
https://distributedscience.github.io/Distributed-CellProfiler/
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support assumed roles and users
#177
ErinWeisbart
closed
1 week ago
0
Add optional CloudWatch Agent
#176
ErinWeisbart
opened
2 weeks ago
0
increase metric reporting
#175
ErinWeisbart
closed
1 week ago
1
return helpful error message
#174
ErinWeisbart
closed
1 week ago
0
add try/except and error messages to file downloads
#173
ErinWeisbart
closed
1 week ago
0
update cellprofiler-plugins organization
#172
ErinWeisbart
closed
1 week ago
0
gp2=>gp3
#171
ErinWeisbart
closed
1 week ago
0
Very slow CellProfiler pipeline start up times
#170
gareth-rogers-healx
closed
1 month ago
5
Add ALWAYS_CONTINUE
#169
bethac07
closed
1 week ago
2
Try/except handling for DOWNLOAD_FILES
#168
bethac07
closed
1 week ago
2
Add WORKSPACE_BUCKET
#167
ErinWeisbart
closed
1 month ago
0
Added additional EBS_VOLUME_SIZEs
#166
emiglietta
closed
2 months ago
0
Think about - exposing number of retries before dead messages in the config file
#165
bethac07
closed
1 week ago
0
Plugin usage not pointing to the new plugin repo structure
#164
bethac07
closed
1 week ago
1
Update exampleFleet_us-east-1.json with new ImageId and Snapshot ID
#163
Zitong-Chen-16
closed
5 months ago
1
Return useful error if download files don't exist
#162
ErinWeisbart
closed
1 week ago
0
Need to update AMI for spot fleet config
#161
Gabcomolet
closed
7 months ago
1
Enable configurable load_data.csv location in config
#160
ErinWeisbart
closed
1 month ago
0
read write from external bucket with profile
#159
ErinWeisbart
closed
2 weeks ago
0
Print easier to read memory used metrics?
#158
ErinWeisbart
closed
1 week ago
2
startCluster print error
#157
ErinWeisbart
opened
11 months ago
0
Improve logging
#156
ErinWeisbart
opened
11 months ago
0
Well formatting run_batch_general.py #148
#155
fefossa
closed
11 months ago
1
Change anything re: plugins?
#154
ErinWeisbart
closed
1 week ago
1
Bugfix
#153
ErinWeisbart
closed
1 year ago
1
Is /home/ubuntu/bucket mount point hardcoded?
#152
sooheon
closed
1 year ago
5
Your spot fleet request is causing an error and is now being cancelled
#151
sooheon
closed
1 year ago
1
update with DSv0.1 improvements
#150
ErinWeisbart
closed
1 year ago
0
Add citation info
#149
ErinWeisbart
closed
8 months ago
4
Format integers for varying well name in run_batch_general
#148
fefossa
closed
8 months ago
0
Clarify how to pass metadata in various DCP modes
#147
bethac07
closed
1 year ago
1
Update troubleshooting_runs.md
#146
rsenft1
closed
1 year ago
1
Fix credential handling
#145
ErinWeisbart
closed
1 week ago
3
Better error message for failed Transfer of CellProfiler logs to S3
#144
ErinWeisbart
closed
1 week ago
2
updated documentation
#143
ErinWeisbart
closed
1 year ago
2
Cleanup open issues
#142
ErinWeisbart
closed
1 year ago
3
Update cp-worker for readability?
#141
ErinWeisbart
closed
1 year ago
2
Comments on Flags for # PLUGINS in config.py
#140
fefossa
closed
1 year ago
2
More docs
#139
ErinWeisbart
closed
1 year ago
0
More documentation on using plugins
#138
ErinWeisbart
closed
1 week ago
0
Enable S3FS mount of path within bucket
#137
ErinWeisbart
closed
2 weeks ago
1
if DOWNLOAD FILES, add warning post-csv filtering
#136
ErinWeisbart
closed
1 year ago
1
Move documentation to Jupyter Book
#135
ErinWeisbart
closed
1 year ago
2
Add better support for plugins
#134
bethac07
closed
1 year ago
6
Need to update queue code
#133
bethac07
opened
1 year ago
6
DOWNLOAD_FILES doesn't fully bypass S3FS
#132
ErinWeisbart
closed
1 year ago
1
Look into new role creation
#131
bethac07
closed
2 weeks ago
2
correct role handling and S3FS bypass
#130
ErinWeisbart
closed
1 year ago
5
ExportToDatabase and/or Path Mapping issues with DCP prevent batch data aggregation on AWS RDS - Workaround Added in Comments
#129
mamrrmam
closed
1 year ago
2
Auto create Dashboards
#128
bethac07
closed
1 year ago
0
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