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Illumina
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GTCtoVCF
Script to convert GTC/BPM files to VCF
Apache License 2.0
41
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31
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Few typos and missing punctuation.
#31
eyherabh
closed
5 years ago
0
Python3 compatibility
#30
KelleyRyanM
closed
5 years ago
1
Update VcfRecordFactory.py
#29
KelleyRyanM
closed
5 years ago
1
Contig header and Chrom record order do not match reference order
#28
brmyers
closed
5 years ago
1
Discrepancies with the VCF Specification
#27
brmyers
closed
5 years ago
3
3 things: iteritems() vs items(); rect to polar; sorting errors
#26
dmcgoldrick
closed
5 years ago
6
vcf.parser error
#25
biopelayo
closed
5 years ago
1
[WIP] Python3 fixes
#24
nkrumm
closed
5 years ago
1
error in mainifest
#23
dora201888
closed
5 years ago
1
Added statement for handling indels for haploid calls
#22
brianhill11
closed
5 years ago
1
Indel haploid calls printed as diploid
#21
brianhill11
closed
5 years ago
2
Additional B allele frequency and log R ratio (BAF and LRR) Format fields
#20
brianhill11
closed
5 years ago
1
Merging B allele frequency and log R ratio for multiple BPMRecords
#19
brianhill11
closed
5 years ago
12
Unable to convert some variants
#18
ns3116
closed
5 years ago
1
Please create setup.py
#17
dbrami
opened
6 years ago
2
logs usage of BPM file when CSV is invoked
#16
dbrami
closed
6 years ago
2
Limitations of --output-vcf-path and --log-file
#15
freeseek
opened
6 years ago
4
BAF and LRR
#14
freeseek
closed
5 years ago
3
using conda, can't get it to work because of some python bug
#13
martiliasf
closed
6 years ago
5
call rate filtering
#12
stephenturner
closed
6 years ago
2
Allow specification of directories containing GTC files
#11
KelleyRyanM
closed
6 years ago
0
Indel refallele
#10
KelleyRyanM
closed
6 years ago
0
Multi gtc
#9
KelleyRyanM
closed
6 years ago
0
Script reports that reference has missing chromosome 6
#8
YourLogoHere
closed
6 years ago
4
Add option to read reference sequence into memory
#7
KelleyRyanM
closed
6 years ago
0
Error using manifest in CSV format
#6
smparsons96
closed
6 years ago
2
Feature/loci filter
#5
KelleyRyanM
closed
6 years ago
1
better documentation on `--unsquash-duplicates`
#4
stephenturner
closed
6 years ago
6
add shebang line
#3
stephenturner
closed
6 years ago
0
Reference allele is not queried for locus
#2
stephenturner
closed
6 years ago
1
reduce manifest to extract subset?
#1
stephenturner
closed
6 years ago
8
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