issues
search
ImagingDataCommons
/
CloudSegmentator
Medical imaging segmentation workflows for FireCloud (Terra) and Seven Bridges Cancer Genomics Cloud
Apache License 2.0
3
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Create a workflow to convert radiomics featues in json files to dataframe
#65
vkt1414
closed
2 months ago
1
enh: add a readme file to dockerfiles and notebooks folder
#64
vkt1414
closed
4 months ago
0
dcm2niix errors
#63
vkt1414
closed
3 weeks ago
14
improve error handling
#62
vkt1414
closed
6 months ago
1
improve error handling
#61
vkt1414
closed
6 months ago
1
add non nlst query, dynamic resource assignment for inference
#60
vkt1414
closed
6 months ago
1
add seg series instance uid
#59
vkt1414
closed
7 months ago
1
Minor fixes
#58
vkt1414
closed
7 months ago
1
Simplify perframe extraction workflow
#57
vkt1414
closed
7 months ago
1
Create keep-alive.yaml
#56
vkt1414
closed
7 months ago
0
Modify segment description
#55
vkt1414
closed
7 months ago
2
update notebooks to remove multiprocessing
#54
vkt1414
closed
7 months ago
1
add utility script to break per-frame FG into groups
#53
fedorov
closed
5 months ago
0
Experiment with grouping segments into separate SEG instances to bring per-frame FG size under 1MB
#52
fedorov
closed
7 months ago
9
reconfigure cwl files and use yaml manifests for sbcgc
#51
vkt1414
closed
7 months ago
4
initialize SegmentLabel from SegmentDescription
#50
fedorov
closed
7 months ago
1
ENH: revisit encoding of algorithm in SR
#49
fedorov
closed
7 months ago
3
fix notebooks and other minor changes after repo reorg
#48
vkt1414
closed
7 months ago
4
reorganization of the repository
#47
fedorov
closed
7 months ago
2
Small improvements to make notebooks more readable/usable
#46
fedorov
opened
7 months ago
0
Simplify the manifest organization and data access
#45
fedorov
opened
7 months ago
7
Improve reproducibility of the workflows
#44
fedorov
opened
7 months ago
3
sr does not need dicom files in order,fix invisible char in radiomics…
#43
vkt1414
closed
7 months ago
1
Point branch references to main at all places
#42
vkt1414
closed
7 months ago
3
Fix references
#41
vkt1414
closed
7 months ago
1
Populate units of radiomics features based on input modality
#40
fedorov
opened
8 months ago
4
Consolidate colors with the terminology csv file
#39
fedorov
closed
7 months ago
5
Eliminate an entire series not just slices with inconsistent geometry
#38
vkt1414
closed
7 months ago
3
use new rgb colors
#37
vkt1414
closed
7 months ago
2
use code meanings from dicom standard
#36
vkt1414
closed
8 months ago
1
Notebooks2
#35
vkt1414
closed
7 months ago
5
Fix radiomics features units
#34
vkt1414
closed
8 months ago
5
firstorder features have incorrect units
#33
fedorov
closed
7 months ago
0
fix gh actions files
#32
vkt1414
closed
7 months ago
1
add center of mass and bounding box codes
#31
vkt1414
closed
8 months ago
3
include seriesnumber, update s5cmd urls to use aws buckets
#30
vkt1414
closed
8 months ago
0
Reorganize repository structure
#29
fedorov
closed
7 months ago
1
update Wdl cwl files
#28
vkt1414
closed
7 months ago
0
Test ghcr.io as an alternate container registry and update necessary permissions
#27
vkt1414
closed
11 months ago
1
Resolve Issue #9 (Reorganizing dockerfiles and docker images CI/CD)
#26
vkt1414
closed
10 months ago
5
fixed dockerfiles
#25
vkt1414
closed
11 months ago
0
Iteration2
#24
vkt1414
closed
11 months ago
0
Iteration2
#23
vkt1414
closed
11 months ago
0
Iteration2
#22
vkt1414
closed
11 months ago
0
Iteration2
#21
vkt1414
closed
11 months ago
0
Iteration2
#20
vkt1414
closed
11 months ago
0
Iteration2
#19
vkt1414
closed
11 months ago
0
Update Dockerfile
#18
vkt1414
closed
11 months ago
0
Update Dockerfile
#17
vkt1414
closed
11 months ago
0
removed additional labels
#16
vkt1414
closed
11 months ago
0
Next