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NBISweden
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IgDiscover-legacy
Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads
https://www.igdiscover.se
MIT License
17
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New IgDiscover repository
#124
marcelm
opened
10 months ago
0
trouble installing with conda
#123
john-dingus
closed
10 months ago
2
error in_rule_read_length_histogram
#122
Jyoung-0108
closed
10 months ago
11
IgDiscover crashes with pandas 2.0.0
#121
ressy
closed
1 year ago
5
Cannot install IgDiscover on M1 MacBook Pro
#120
kllenart
closed
1 year ago
3
clonotypes: Implement --clustered option and allow multiple input tables
#119
marcelm
closed
10 months ago
3
Try to make the cache work on macOS
#118
marcelm
closed
2 years ago
0
Bump IgBLAST to 1.17
#117
marcelm
closed
2 years ago
0
Solving environment: failed
#116
pursellta
closed
3 years ago
2
error about Microsoft Visual C++ on installation
#115
zenonisole
closed
10 months ago
1
Complain if the input reads contain non-nucleotide characters/spaces
#114
bridgelan
closed
10 months ago
10
length of CDR1 region is not divisible by three
#113
williamdlees
closed
3 years ago
3
IgBlast error
#112
isnapkov
closed
3 years ago
1
Error running against the test data set
#111
williamdlees
closed
3 years ago
3
IgDiscover crashes if no arguments are given
#110
ressy
closed
3 years ago
1
snakemake error
#109
kokomutai
closed
4 years ago
12
Give sensible error message when running init without DISPLAY
#108
marcelm
closed
2 years ago
0
Snakemake workflow problem with symlinks and temp()
#107
ressy
closed
4 years ago
4
Error in rule read_length_histogram
#106
ayeletperes
closed
4 years ago
3
Where is the complete germline DataBase?
#105
CollinJ0
closed
10 months ago
1
Docs may need updating for J discovery
#104
ressy
closed
4 years ago
2
Error: No V genes were discovered in this iteration
#103
LandiMi2
closed
4 years ago
11
Parse Flash stats fails
#102
souptonuts
closed
10 months ago
3
Test dataset processing fails when using FLASH end-pairing
#101
souptonuts
closed
5 years ago
2
IgBLAST mangles sequence identifiers that are accessions
#100
carollia
closed
5 years ago
3
How do I tell if IgDiscover has hung?
#99
scharch
closed
5 years ago
9
What is CDR3_shared_ratio
#98
carollia
closed
10 months ago
2
Failure to identify V genes
#97
carollia
closed
5 years ago
8
germlinefilter: Remove --minimum-db-diff
#96
marcelm
closed
10 months ago
1
Increase required V coverage
#95
marcelm
closed
10 months ago
0
Remove vsearch from dependencies
#94
marcelm
closed
5 years ago
0
SyntaxError: Not all output, log and benchmark files of rule trim_forward_primers contain the same wildcards
#93
marcelm
closed
5 years ago
0
Running light chain sequences
#92
ayeletperes
closed
5 years ago
4
germlinefilter: Allow a maximum difference to database sequence
#91
mateuszatki
closed
4 years ago
1
discover: Use all CDR3s to compute shared ratio
#90
mateuszatki
closed
10 months ago
2
* igdiscover/init.py: Allow species specific options in config
#89
mateuszatki
closed
10 months ago
1
Increase required pigz version to 2.4
#88
marcelm
closed
5 years ago
1
Remove differences setting in germline filters
#87
marcelm
closed
5 years ago
1
"nofinal" does not work
#86
marcelm
closed
5 years ago
0
Possibly get rid of sqt dependency
#85
marcelm
closed
3 years ago
0
Collect more statistics
#84
marcelm
closed
6 years ago
2
Set the number of thread and disbale .cache
#83
prod-feng
closed
6 years ago
2
Error in running matplotlib
#82
tprodanov
closed
6 years ago
3
Error during J-discovery in IgDiscover v0.9
#81
willbradshaw
closed
6 years ago
7
AttributeError: 'FigureCanvasPdf' object has no attribute 'get_renderer'
#80
rungitta
closed
6 years ago
5
Problems installing IgDiscover development in a new Ubuntu 16.04
#79
NestorVB
closed
7 years ago
2
clusterplot produces IndexError
#78
marcelm
closed
7 years ago
4
Investigate regression in clusterplot with seaborn 0.8
#77
marcelm
closed
7 years ago
1
Add an option for not using discovered J genes in subsequent iterations
#76
marcelm
closed
7 years ago
0
Can we use sequence qualities?
#75
marcelm
closed
10 months ago
0
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