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CoDIAC
GNU General Public License v3.0
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Pdb fetch graceful
#60
knaegle
closed
1 week ago
0
Add an append approach
#59
knaegle
closed
1 week ago
1
PDB fetch failures due to internet connectivity - should be handled better
#58
knaegle
opened
2 weeks ago
2
Proteins lacking domain architectures preventing reference file generation
#57
adshimpi
closed
3 weeks ago
0
KeyError while fetching domain architectures
#56
adshimpi
closed
4 weeks ago
0
Closes #54. Updated this to use start position as the unique keys in …
#55
knaegle
closed
1 month ago
0
Integrate structure reference misnames domains in multidomain proteins
#54
knaegle
closed
1 month ago
0
Interpro updates
#53
knaegle
closed
1 month ago
0
Incorrect arrangement of domains in Uniprot reference file
#52
alekhyaa2
closed
1 month ago
1
Add Jalview functions to find intersection of sets
#51
knaegle
closed
1 month ago
1
Lower Order Species UniProt ID Issue
#50
adshimpi
closed
4 weeks ago
0
Unmodeled regions returned as domains in PDB reference csv file
#49
alekhyaa2
opened
2 months ago
2
Non-human domain start error
#48
adshimpi
closed
2 months ago
0
PTMs by Phosphositeplus
#47
knaegle
closed
2 months ago
0
Replacing Inter
#46
campbellla
closed
3 months ago
2
Error Running makeRefFile Function from UniProt.py
#45
juliannahitchcock00
closed
1 month ago
5
Need to modify CoDIAC to accommodate small molecule entities
#44
juliannahitchcock00
opened
5 months ago
0
Domain pdb anno bug
#43
knaegle
closed
5 months ago
0
Found "ghost" architectures missing domain annotations in PDB annotated file
#42
knaegle
closed
5 months ago
2
Create a architecture-based filter for an alignment file
#41
knaegle
closed
6 months ago
1
Integration bug: Edits to PDBHelper
#40
alekhyaa2
closed
9 months ago
0
Update back end software (@alekhyaa2 )
#39
knaegle
closed
9 months ago
1
A missing STAT protein domain in reference files
#38
alekhyaa2
closed
9 months ago
2
Naming convention of tandem domains
#37
alekhyaa2
closed
9 months ago
2
Handling PTM notations in contactMap class
#36
alekhyaa2
closed
9 months ago
2
Integration feature and bug fixes
#35
knaegle
closed
9 months ago
2
Use consistent headers in PDB metadata file
#34
knaegle
closed
9 months ago
2
Speed up Domain Fetch in Uniprot Reference (Interpro)
#33
knaegle
closed
1 month ago
1
Need to modify translateFeatures.py so that multiple feature types can be translated in one run
#32
gmart98
closed
1 month ago
0
Unmodeled residues in the structSeq not being recorded as gaps in PDB metafile
#31
alekhyaa2
closed
9 months ago
3
Issue with "gaps" recorded in PDB file and Adjacency File
#28
alekhyaa2
closed
9 months ago
1
Inconsistent mutation data recorded in different columns of PDB Metadata file
#27
alekhyaa2
closed
9 months ago
3
Inconsistent Gene name data recorded in PDB Metafile
#26
alekhyaa2
closed
1 month ago
2
Update PDB reference column names
#25
knaegle
closed
9 months ago
1
Error generating consistent SH2 domain sequences across PDB structures of same gene
#24
alekhyaa2
closed
1 month ago
0
Error integrating feature files
#23
alekhyaa2
closed
7 months ago
1
Write documentation/help for PDB metadata file
#22
knaegle
closed
1 month ago
0
Uniprot domain annotations - semicolon additions exist in some domain names
#21
knaegle
closed
10 months ago
0
Add InterPro ID to Structure Integration and add filter step
#20
knaegle
closed
10 months ago
0
Create a way to shorten/lengthen headers for fasta files
#19
knaegle
closed
10 months ago
0
Uniprot Fectch Issue
#18
adshimpi
closed
11 months ago
0
Improve other species fetch of InterPro records
#17
knaegle
closed
11 months ago
1
Non-human and mouse Uniprot and Interpro Fetching Errors
#16
adshimpi
closed
11 months ago
1
Seeing overlapping domains in InterPro annotations
#15
knaegle
closed
11 months ago
4
Interpro Domain annotation, not always getting the correct level
#14
knaegle
closed
11 months ago
3
Integrate InterPro Domain
#13
knaegle
closed
1 year ago
0
Mutations and modifications reported for all entities
#12
knaegle
closed
1 year ago
0
Domain Architecture not printing in the order of the N- to C-term direction
#11
knaegle
closed
1 year ago
0
Mutation printing in PDB struct ref incorrect for mutations
#10
knaegle
closed
1 year ago
0
PDB annotation file only reporting one chain
#9
knaegle
closed
1 year ago
2
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