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NathanSkene
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EWCE
Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
https://nathanskene.github.io/EWCE/index.html
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Compute q-values during during `bootstrap_enrichment_test`
#44
bschilder
closed
2 years ago
4
`generate_bootstrap_plots`: Make messages more readable
#43
bschilder
closed
2 years ago
1
`generate_bootstrap_plots`: address warning
#42
bschilder
closed
2 years ago
1
Enable `merge_two_expfiles` to handle various kinds of (sparse) matrices
#41
bschilder
closed
2 years ago
0
Add arg checks to ensure `bootstrap_enrichment_test` won't fail later
#40
bschilder
closed
2 years ago
0
Provide default background genes
#39
bschilder
closed
2 years ago
1
Split documentation into more manageable vignettes
#38
bschilder
closed
2 years ago
0
HGNC error messages added
#37
bobGSmith
closed
2 years ago
0
Imputed data for EWCE object
#36
kvshams
closed
3 years ago
1
Enable offline runs of EWCE with ExperimentHub
#35
Al-Murphy
closed
1 year ago
4
Cannot connect to ExperimentHub server, using 'localHub=TRUE' instead
#34
liuhankui
closed
3 years ago
5
can not install EWCE
#33
BenxiaHu
closed
3 years ago
2
Add check bootstrap_enrichment_test gene list not a factor
#32
Al-Murphy
closed
2 years ago
2
Installation error: package 'ewceData' requires R >= 4.1
#31
zhanglab2008
closed
3 years ago
6
Enable meta-data (such as that generated by `get.celltype.table` and Brian's `plot_gene_metrics`) to be stored in the CTD
#30
NathanSkene
closed
2 years ago
1
Setup one initial unit test with testthat and understand how it works with travis
#29
NathanSkene
closed
3 years ago
2
Get EWCE back onto bioconductor
#28
NathanSkene
closed
3 years ago
0
Setup codecov and add badge to the repo
#27
NathanSkene
closed
3 years ago
1
Setup unittesting with testthat
#26
NathanSkene
closed
3 years ago
3
Remove the docker push from the travis commands
#25
NathanSkene
closed
3 years ago
1
Add functions for running lots of lists in parallel + graphing results
#24
NathanSkene
closed
1 year ago
1
DelayedArray, Orthologues, Ingest data, Plots, Normalize, Utilities
#23
bschilder
closed
3 years ago
10
EWCE should use One2One instead of data("mouse_to_human_homologs)
#22
NathanSkene
closed
2 years ago
1
removed makeCluster function
#21
nfancy
closed
3 years ago
0
I had broken generate.celltype.data while trying to make it run faste…
#20
NathanSkene
closed
3 years ago
0
understanding the inputs for EWCE
#19
gouthamatla
closed
3 years ago
2
problems running docker image of ewce
#18
mocherry
closed
3 years ago
1
Dev pkgdown
#17
NathanSkene
closed
3 years ago
0
Dev docker
#16
NathanSkene
closed
3 years ago
0
Dev big matrix
#15
NathanSkene
closed
3 years ago
0
"drop.uninformative.genes" uses functions for mainly microarray data?
#14
kleurless
closed
2 years ago
3
Use linear algebra to speed up computation of the celltype data matrix
#13
NathanSkene
closed
3 years ago
2
Add missing dependencies
#12
eturkes
closed
4 years ago
0
Add error catch for when bootstrap.enrichment.test is called and $mean_exp has different dimensions to $specificity
#11
NathanSkene
closed
1 year ago
1
Calculating cell type specificity scores
#10
tkamath1
closed
4 years ago
2
Give error if generate_celltype_data is called with ensembl ID's as gene names
#9
NathanSkene
closed
2 years ago
1
Get it working with large input matrices.
#8
NathanSkene
closed
2 years ago
10
generate.celltype.data()
#7
yipingLin
closed
4 years ago
2
Progress bar
#6
alexandruioanvoda
closed
3 years ago
1
parallel computing issues during generate.celltype.data
#5
krademaker
closed
5 years ago
2
invalid number of intervals error when running generate.celltype.data()
#4
alexandruioanvoda
closed
5 years ago
13
bin.specificity.into.quantiles NOT in namespace
#3
alexandruioanvoda
closed
5 years ago
8
fix HGNC names exits with error
#2
rbutleriii
closed
3 years ago
1
bootstrap.enrichment.test returns error about cantrecognize gene
#1
WeiCSong
closed
5 years ago
1
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