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OHDSI
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dbt-synthea
[Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM
https://ohdsi.github.io/dbt-synthea/
Apache License 2.0
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Fix STCM data types and add dbt casts
#104
katy-sadowski
closed
9 hours ago
0
Database Error in test relationships_source_to_concept_map_source_concept_id__concept_id__ref_concept_ (models/omop/_models/source_to_concept_map.yml)
#103
dafraile
closed
9 hours ago
2
refactor: complete metadata for sources, remove unused yml column metadata
#102
lawrenceadams
opened
4 days ago
0
Fix stg schema
#101
katy-sadowski
closed
5 days ago
2
refactor: complete seed column definitions and move location
#100
lawrenceadams
closed
6 days ago
1
reference issue in int__assign_all_visit_ids for visit_occurrence_id
#99
adambouras
opened
1 week ago
1
chore: Update model `yml` column definitions / metadata
#98
lawrenceadams
closed
5 days ago
2
chore: Update seed column metadata
#97
lawrenceadams
closed
6 days ago
0
fix: create empty source_to_concept_map model
#96
lawrenceadams
closed
2 weeks ago
1
Create empty source_to_concept_map model instead of seeding it
#95
katy-sadowski
closed
2 weeks ago
1
Instructions or script for loading raw data into Postgres
#94
katy-sadowski
opened
3 weeks ago
0
Fixed loading error with ATHENA Vocabularies
#93
TheCedarPrince
closed
3 weeks ago
0
Feature idea: ETL characterizations
#92
katy-sadowski
opened
4 weeks ago
4
[NOTES] Experiences with dbt-synthea for Big Patient Datasets
#91
TheCedarPrince
opened
4 weeks ago
29
[BUG] Unclear Error When Loading Synthea Vocabularies
#90
TheCedarPrince
closed
3 weeks ago
4
Clarified about where to create `.dbt` Folder
#89
TheCedarPrince
opened
4 weeks ago
5
[BUG] `cffi` Python Package Missing but Required
#88
TheCedarPrince
opened
4 weeks ago
4
[DOCS] Added notice about required Python version
#87
TheCedarPrince
closed
3 weeks ago
1
docs: improve / customise default `overview` page of dbt docs
#86
lawrenceadams
opened
4 weeks ago
0
feat: Improve `care_site_types` mapping
#85
lawrenceadams
opened
4 weeks ago
2
Add link to abstract
#84
katy-sadowski
closed
4 weeks ago
0
refactor: build location model properly using patient and organization as a source
#83
lawrenceadams
closed
4 weeks ago
4
Location table is orphaned
#82
katy-sadowski
closed
4 weeks ago
1
refactor: use determinisitic provider id
#81
lawrenceadams
closed
3 weeks ago
2
fix: build project prior to `dbt docs generate`
#80
lawrenceadams
closed
1 month ago
2
refactor: use `datediff`/`dateadd` macro
#79
lawrenceadams
closed
1 month ago
0
Fix inconsistent keyword quoting in staging models
#78
lawrenceadams
closed
1 month ago
1
Non-deterministic use of `row_number()`
#77
lawrenceadams
closed
3 weeks ago
4
Inconsistent keyword quoting in staging models
#76
lawrenceadams
closed
1 month ago
1
`dbt docs` does not generate column types when used in workflows
#75
lawrenceadams
closed
1 month ago
4
Potentially join on date instead of datetime for condition costs
#74
katy-sadowski
opened
1 month ago
0
feat: Add workflow to generate DBT documentation and deploy to GitHub Pages
#73
lawrenceadams
closed
1 month ago
4
Update fork to demo workflows
#72
lawrenceadams
closed
1 month ago
0
Demo change
#71
lawrenceadams
closed
1 month ago
0
fix: use explicit seed types or null type casts where necessary for postgres
#70
lawrenceadams
closed
1 month ago
2
refactor: Use `dbt.cast` instead of `dbt.try_cast`
#69
lawrenceadams
closed
1 month ago
0
Avoid use of `safe_cast`?
#68
lawrenceadams
closed
1 month ago
5
chore: refactor dependencies
#67
lawrenceadams
closed
1 month ago
0
chore: cleanup and refactor requirements
#66
lawrenceadams
closed
1 month ago
3
Remove conditional build of vocab models
#65
katy-sadowski
closed
1 month ago
0
Remove OMOP seeds, rename vocab seeds
#64
katy-sadowski
closed
1 month ago
2
fix: add missing concepts causing failing tests
#63
lawrenceadams
closed
1 month ago
0
fix: Resolve issues highlighted by #59
#62
lawrenceadams
closed
1 month ago
0
feat: Add final OMOP models yaml definitions with associated dbt style tests
#61
lawrenceadams
closed
1 month ago
9
feat: Add script to generate dbt YAML files from OMOP CDM HTML docs
#60
lawrenceadams
closed
1 month ago
0
feat: Add script for automatically generating DBT Configs
#59
lawrenceadams
closed
1 month ago
0
fix: update additional dependencies in pre-commit config
#58
lawrenceadams
closed
1 month ago
0
Devcontainer support including Duckdb bootstrapped with minimal synthetic data
#57
vvcb
opened
2 months ago
3
fix: remove broken relationship test
#56
lawrenceadams
closed
2 months ago
0
chore: Fix docs/Simplify setup
#55
lawrenceadams
closed
1 month ago
0
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