PathwayCommons chibe issues

PathwayCommons / chibe

Pathway visualization and analysis tool for Pathway Commons and other BioPAX data

Eclipse Public License 1.0

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issues

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Bump spring-core from 4.3.21.RELEASE to 5.2.22.RELEASE

#82 dependabot[bot] opened 2 years ago
0
Bump spring-core from 4.3.21.RELEASE to 5.3.19

#81 dependabot[bot] closed 2 years ago
1
Bump spring-core from 4.3.21.RELEASE to 5.3.18

#80 dependabot[bot] closed 2 years ago
1
Provide Updated Windows .bat File to Switch to Java 6

#79 cannin opened 3 years ago
1
State that Java 6 is needed in README

#78 cannin opened 3 years ago
0
Bump xmlbeans from 2.5.0 to 3.0.0

#77 dependabot[bot] closed 3 years ago
0
Bump spring-core from 4.3.3.RELEASE to 4.3.21.RELEASE

#76 dependabot[bot] closed 3 years ago
0
Bump junit from 4.7 to 4.13.1

#75 dependabot[bot] closed 3 years ago
0
Bump spring-core from 4.3.3.RELEASE to 4.3.19.RELEASE

#74 dependabot[bot] closed 3 years ago
1
Move nodes using arrow keys

#73 ozgunbabur opened 5 years ago
0
ChiBE won't start, help please?

#72 lczqd closed 5 years ago
5
Do not call shiftToLastRow() in getWidth() method of Organization.

#71 metincansiper closed 6 years ago
0
Sort compound node members alphabetically in tiling operation

#70 metincansiper closed 6 years ago
0
Compound node members could be sorted alphabetically

#69 ozgunbabur closed 5 years ago
5
reaction2gene.txt not found

#68 marieBvr closed 5 years ago
3
add .travis.yml

#67 kozo2 closed 8 years ago
0
Change license in installers & docs

#66 ugurdogrusoz closed 4 years ago
2
Cannot load BioPax from EcoCyc

#65 GoogleCodeExporter closed 9 years ago
2
Cannot load SIF file generated using ChiBE

#64 GoogleCodeExporter closed 5 years ago
1
Load RPPA - Phosphosite changes are incorrectly interpreted as also total protein

#63 GoogleCodeExporter opened 9 years ago
1
Add drug nodes option

#62 GoogleCodeExporter opened 9 years ago
0
Mac: Load RPPA data: unconnected nodes don't group together

#61 GoogleCodeExporter opened 9 years ago
1
Saving SIF Files of L3 Models

#60 GoogleCodeExporter closed 9 years ago
1
Update User's Guide for 2.1

#59 GoogleCodeExporter closed 9 years ago
1
Test changes in fetching from cBio portal

#58 GoogleCodeExporter opened 9 years ago
1
Test compartment show/hide

#57 GoogleCodeExporter closed 9 years ago
3
Use a stable / fixed version of PC

#56 GoogleCodeExporter opened 9 years ago
0
Update web page for Release Notes for 2.1

#55 GoogleCodeExporter closed 9 years ago
0
Change version from 2.0 to 2.1

#54 GoogleCodeExporter closed 9 years ago
1
portal expression profiles without z-scores should be hidden

#53 GoogleCodeExporter closed 9 years ago
5
Handling big query results

#52 GoogleCodeExporter closed 9 years ago
1
Move ubiques to the compartment of the reaction

#51 GoogleCodeExporter opened 9 years ago
0
Decrease compartmentless molecules.

#50 GoogleCodeExporter opened 9 years ago
0
Zoom with scroller

#49 GoogleCodeExporter opened 9 years ago
0
Update ChiBE logo

#48 GoogleCodeExporter closed 9 years ago
8
Tag sources for 2.0

#47 GoogleCodeExporter closed 9 years ago
0
Web page screenshots

#46 GoogleCodeExporter closed 9 years ago
0
Raw data conversion wizard freeze in Mac

#45 GoogleCodeExporter closed 9 years ago
2
No warning on sif creation with no model

#44 GoogleCodeExporter closed 9 years ago
4
Update query documentation.

#43 GoogleCodeExporter closed 9 years ago
1
Installers for Windows, Linux and Mac

#42 GoogleCodeExporter closed 9 years ago
7
Query is performed after closing the query dialog

#41 GoogleCodeExporter closed 9 years ago
1
Layout is not performed while running from jar

#40 GoogleCodeExporter closed 9 years ago
2
Raw data conversion dialog next button not enabled

#39 GoogleCodeExporter closed 9 years ago
2
Experiment data values table columns too narrow

#38 GoogleCodeExporter closed 9 years ago
8
Saving should ensure .owl extension

#37 GoogleCodeExporter closed 9 years ago
7
GEO data importer does not support multiple-series-file-containing data sets.

#36 GoogleCodeExporter opened 9 years ago
2
Cannot save images as .gif

#35 GoogleCodeExporter closed 9 years ago
10
Portal Data Details dialog availability

#34 GoogleCodeExporter closed 9 years ago
2
Query performed even if there are unknown symbols

#33 GoogleCodeExporter closed 9 years ago
2