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UCLouvain-CBIO
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scp
Single cell proteomics data processing
https://uclouvain-cbio.github.io/scp/index.html
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Sparse arrays with NAs
#75
lgatto
opened
2 weeks ago
3
scp_data_modelling vignette
#74
edemmott
closed
2 weeks ago
4
scpModel workflow/readSCP
#73
edemmott
opened
1 month ago
4
QR integration: removing residuals and effects slots before moving to lm.fit
#72
leopoldguyot
closed
2 months ago
0
Implementing a QR decomposition Modeling Method for scp
#71
leopoldguyot
opened
2 months ago
0
Progression on the refactoring of scpModel class (removing scpModelFit residuals, effect and levels slots)
#70
leopoldguyot
closed
2 months ago
0
Debug integration of vdiffr in GHA
#69
cvanderaa
opened
2 months ago
0
Msqrob2 integration
#68
leopoldguyot
closed
2 months ago
1
fix: solved bug in DA when missing contrast level in modelled feature
#67
cvanderaa
closed
2 months ago
1
Issue55
#66
cvanderaa
closed
2 months ago
0
Differential analysis: non-conformable arguments
#65
samgregoire
closed
2 months ago
5
n/p ratio clarification
#64
samgregoire
opened
4 months ago
1
Unit testing scplainer (#59)
#63
cvanderaa
closed
3 months ago
1
Improve documentation for visualization
#62
cvanderaa
opened
6 months ago
0
error when using filterFeatures
#61
Axe2Ash
closed
6 months ago
4
docs: illustrated addReducedDim in vignette
#60
cvanderaa
closed
6 months ago
0
Unit testing scplainer
#59
cvanderaa
closed
2 months ago
1
Subsetting a `SingleCellExperiment` breaks the `ScpModel` object
#58
cvanderaa
opened
7 months ago
8
refactor: use QFeatures reading functions
#57
lgatto
closed
6 months ago
0
Incorrect inference with scplainer
#56
cvanderaa
closed
6 months ago
9
Small issue in scplainer: volcano plot
#55
shimin-chen
closed
2 months ago
5
Check for > 1 non-NA values
#54
lgatto
closed
6 months ago
9
scplainer: could not find function "scpModelWorkflow"
#53
shimin-chen
closed
8 months ago
2
scplainer: Component analysis and reducedDims
#52
lgatto
closed
6 months ago
6
GHA error
#51
lgatto
closed
8 months ago
0
Scplainer
#50
cvanderaa
closed
6 months ago
2
Issue46
#49
cvanderaa
closed
9 months ago
2
DIA / LFQ compatibility
#48
prvst
closed
6 months ago
6
Help to replicate graph
#47
prvst
closed
11 months ago
2
Cite scp workflow chapter
#46
lgatto
opened
12 months ago
3
Asca merge
#45
cvanderaa
closed
9 months ago
0
Compute per cell metrics (and per feature?)
#44
cvanderaa
opened
1 year ago
0
SCP.replication
#43
xinpengdun
closed
1 year ago
1
feat: function to create a QFeatures object from DIANN output
#42
cvanderaa
closed
6 months ago
3
Issue40
#41
cvanderaa
closed
1 year ago
2
Missing values vignette
#40
lgatto
opened
1 year ago
2
Renaming default branch
#39
cvanderaa
closed
1 year ago
1
Rethink how coefficients of variation are computed
#38
cvanderaa
opened
1 year ago
0
normByType function in advanced usage vignette
#37
steveb-123
closed
1 year ago
1
Fix scp vignette
#36
cvanderaa
closed
1 year ago
2
Integrate disk-backed assays
#35
cvanderaa
closed
2 years ago
1
refactor `divideByReference()`
#34
cvanderaa
opened
2 years ago
1
Error plotting scp
#33
demar01
closed
1 year ago
4
Improve the readSCP vignette
#32
cvanderaa
closed
2 years ago
4
apply medians over cols or colMedians
#31
lgatto
closed
3 years ago
1
Documentation: create a downstream analysis vignette
#30
cvanderaa
closed
3 years ago
1
Feature request: create a Shiny app
#29
cvanderaa
opened
3 years ago
1
Improve vignettes with downstream analysis example
#28
cvanderaa
closed
6 months ago
1
Minor: aggregatefeaturesoverassays
#27
edemmott
closed
3 years ago
1
pep2qvalue missing?
#26
edemmott
closed
3 years ago
3
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