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aidenlab
/
straw
Extract data quickly from Juicebox via straw
MIT License
61
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36
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Crash when trying to fetch a normalization that's not present
#137
jonathancasper
opened
1 day ago
1
Had to add an include statement in the straw.cpp file
#136
princeps091-binf
opened
2 months ago
0
fix reassigning memory stream issues
#135
sa501428
closed
3 months ago
0
Use libraries from the system (Rtools), refrain from downloading.
#134
kalibera
closed
5 months ago
0
Use rtools43 libcurl when available, fixes arm64 builds
#133
jeroen
closed
5 months ago
0
error: File doesn't have the given chr_chr map.
#132
charlottewright
opened
5 months ago
0
Segmentation fault with plot_hic_map
#131
AlcaArctica
opened
6 months ago
0
想知道具体参数的上下限，getRecordsAsMatrix和getRecords分别得到什么信息？
#130
xiangyanghuakai666
opened
7 months ago
0
can't install hic-straw on win11 python3.9
#129
fazhang-master
opened
10 months ago
5
can't install hic-straw on win11 python3.9
#128
fazhang-master
closed
10 months ago
0
Matrix printing and basic tests
#127
sa501428
closed
10 months ago
0
optimize out temporary matrix from getRecordsAsMatrix()
#126
fredlas
closed
10 months ago
0
Segmentation fault when calling mzd.getRecordsAsMatrix
#125
WangJiuming
closed
1 year ago
4
straw binaries for linux is missing
#124
zhangli271828
opened
1 year ago
0
Error finding block data
#123
DavidWarrenKatz
opened
1 year ago
4
plot heatmap from the raw hic file(get from the juicer)
#122
ChenDepp
opened
1 year ago
3
What is 'NaN' in the third column in retreived txt files
#121
jiangshan529
opened
1 year ago
18
Installation on Linux not working?
#120
Phlya
opened
1 year ago
3
Python: when c2 <= c1 output is not flipped back
#119
lldelisle
opened
1 year ago
0
Configure query
#118
Sen0108
closed
1 year ago
3
Update readme for import straw
#117
obada-alzoubi
opened
1 year ago
0
Q: Fastest way to determine if mzd has no records
#116
reg-el
closed
1 year ago
1
Could not install on windows.
#115
liudonghua123
opened
1 year ago
3
Add function for reading available normalizations from .hic file.
#114
EricSDavis
closed
1 year ago
2
Is there a way to extract the inter-balanced matrix or the genome-wide matrix?
#113
mellofariam
opened
2 years ago
3
Can't install hic-straw with pip in conda
#112
mozesjacobs
closed
2 years ago
6
remove smoothing
#111
sa501428
closed
2 years ago
0
remove auto from c++ flavor
#110
sa501428
closed
2 years ago
0
reading for big footers
#109
sa501428
closed
2 years ago
0
straw to matrix
#108
sa501428
closed
2 years ago
0
strawR update
#107
sa501428
opened
2 years ago
3
fix chromosome ordering
#106
sa501428
closed
2 years ago
0
bug fix
#105
sa501428
closed
2 years ago
0
update to match main api, bug fix
#104
sa501428
closed
2 years ago
0
bug fix for opposite order
#103
sa501428
closed
2 years ago
0
updates to number of records, code cleanup
#102
sa501428
closed
2 years ago
0
Error installing in Pycharm
#101
MahdiSayadSadr
opened
2 years ago
3
bug fix
#100
sa501428
closed
2 years ago
0
straw and strawr don't dump same values
#99
ArielPaulson
opened
2 years ago
1
fix casting to numpy
#98
sa501428
closed
2 years ago
0
allow get expected and get norms
#97
sa501428
closed
2 years ago
0
fix typo
#96
sa501428
closed
2 years ago
0
update straw
#95
sa501428
closed
2 years ago
0
update straw
#94
sa501428
closed
2 years ago
0
add method for getting number of contacts
#93
sa501428
closed
2 years ago
0
fix bugs and improve functionality
#92
sa501428
closed
2 years ago
0
Helper3
#91
sa501428
closed
2 years ago
0
Rolling median implementation
#90
MahdiSayadSadr
closed
2 years ago
0
pull changes
#89
sa501428
closed
2 years ago
0
Straw takes too much time to run locally in comparison to Collab notebook.
#88
BlackPianoCat
closed
2 years ago
3
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