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aidenlab
/
straw
Extract data quickly from Juicebox via straw
MIT License
61
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36
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Fix for URL files (particularly on Mac), adapt auxiliary R functions for URL files, and update version numbers
#87
cwenger
closed
2 years ago
0
Read resolutions
#86
sa501428
closed
3 years ago
0
pip install command not listed in README
#85
paulmenzel
opened
3 years ago
5
Change print and return to raise Error
#84
Balthasar-eu
closed
3 years ago
2
In case of detected errors, straw prints them and returns instead of raising an Exception
#83
Balthasar-eu
closed
3 years ago
1
Fix for rwinlib ucrt binaries
#82
jeroen
closed
3 years ago
5
update main
#81
sa501428
closed
3 years ago
0
Declare curl in SystemRequirements in the R package
#80
Enchufa2
closed
3 years ago
4
Last few changes for CRAN submission
#79
cwenger
closed
3 years ago
0
Minor fixes uncovered during CRAN submission
#78
cwenger
closed
3 years ago
0
Bringing R C++ code up to date with the main C++ code
#77
cwenger
closed
3 years ago
2
Adding a few features and cleanup for CRAN submission
#76
cwenger
closed
3 years ago
0
is the strawc package on bioconda official?
#75
TTTPOB
closed
3 years ago
5
not enough arguments
#74
TheCatalyticMicroChip
opened
3 years ago
5
fix bug
#73
sa501428
closed
3 years ago
0
Merge pull request #7 from PhanstielLab/master
#72
sa501428
closed
3 years ago
0
More fixes for Windows
#71
cwenger
closed
3 years ago
4
Major rewrite and reorganization of straw
#70
sa501428
closed
3 years ago
0
Fixes for Windows
#69
cwenger
closed
3 years ago
7
Long running then return an empty list (Python version)
#68
Nanguage
closed
3 years ago
2
Fix all R package warnings and notes
#67
cwenger
closed
3 years ago
1
changed matrix to an optional argument in RcppExports.R
#66
sharonsun1999
closed
3 years ago
0
update version number
#65
sa501428
closed
3 years ago
0
Merging branches
#64
sa501428
closed
3 years ago
0
__init__() takes from 2 to 3 positional arguments but 7 were given
#63
damianv98
opened
3 years ago
0
Merge pull request #1 from aidenlab/master
#62
sharonsun1999
closed
3 years ago
0
merging in additional format reading
#61
sharonsun1999
closed
3 years ago
0
Incompatible function signature introduced by a recent commit (0e9cfa)
#60
haizi-zh
closed
3 years ago
6
Straw update to v9
#59
nchernia
closed
3 years ago
1
Update read hic header to handle v9
#58
nchernia
closed
3 years ago
0
read header error
#57
antarikshtyagi
closed
3 years ago
4
the error of test data
#56
ningwei-wei
closed
3 years ago
3
Add `matrix` parameter to extract `oe` data
#55
cwenger
closed
3 years ago
2
-bash: ./straw: Permission denied
#54
LucasPhilipp
closed
3 years ago
2
Python speed
#53
sa501428
closed
3 years ago
0
added else-block for if-block on line #699
#52
srcoulombe
closed
3 years ago
0
Issue loading .hic file from 4DN Data Portal
#51
srcoulombe
closed
4 years ago
5
python strawC should report data in a more usable format
#50
ChenfuShi
opened
4 years ago
1
Can you update pip to reflect the current version 0.08 ?
#49
marianogabitto
opened
4 years ago
3
chr_chr map ERROR
#48
awezmm
opened
4 years ago
3
Module for reading header metadata of HiC file as a dictionary
#47
rraadd88
closed
4 years ago
5
segmentation fault
#46
dawe
closed
4 years ago
3
Potential bug in straw python version
#45
BaconZhou
closed
3 years ago
0
Small test data
#44
joachimwolff
closed
4 years ago
1
Restructuring of code
#43
sa501428
closed
4 years ago
2
Silent failures in straw/straw.py
#42
srcoulombe
opened
4 years ago
2
Updated pypi version
#41
zozo123
closed
4 years ago
0
Updated pypi version
#40
zozo123
closed
4 years ago
0
modularized read_hic_header script
#39
srcoulombe
closed
4 years ago
1
readMatrix raises ValueError
#38
srcoulombe
closed
5 years ago
0
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