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amplab
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snap
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
https://www.microsoft.com/en-us/research/project/snap/
Apache License 2.0
288
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66
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Paired read matcher can use enormous memory for large input with many chimeric reads
#69
bolosky
closed
4 years ago
1
no match for max(unsigned long, _int64)
#68
mr-c
closed
8 years ago
2
remove "-msse", not needed for 64 bit systems
#67
mr-c
closed
4 years ago
2
spelling fixes
#66
mr-c
closed
8 years ago
1
Output stats is calculated incorrectly in pair-end alignment when -F u is turned on.
#65
zyxue
closed
8 years ago
1
Renamed Windows binary to match Linux binary (snap-aligner)
#64
alpinemountain
opened
8 years ago
1
Initial code review of changes for hg38 alt contigs
#63
rnpandya
opened
8 years ago
14
PairedReadMatcher without -ku drops reads where both halves are unaligned in SAM/BAM input
#62
bolosky
closed
9 years ago
1
Tiny fraction of reads mapped
#61
blahah
opened
9 years ago
10
Very long FASTA defline parsed incorrectly, crashes
#60
blahah
closed
9 years ago
3
propagate new name for SNAP: snap-aligner
#59
mr-c
closed
9 years ago
4
remove proprietary files
#58
mr-c
closed
9 years ago
2
standard version scheme
#57
mr-c
closed
4 years ago
4
SNAP master build error on Mac OSX
#56
yakneens
closed
4 years ago
1
remove SM and PL from tag from every read
#55
kevyin
opened
9 years ago
1
Invalid SM tag in sam record
#54
kevyin
opened
9 years ago
0
BAM record error: found spliced alignment without XS attribute
#53
yanzhangusa
closed
9 years ago
0
Updates to 1.0beta.18
#52
snewhouse
closed
4 years ago
0
compilation problem on Snow leopard Mac osx in SortedDataWriter.cpp
#51
pcantalupo
closed
9 years ago
2
-so functionality is different in dev branch
#50
arahuja
closed
9 years ago
1
Switch over dev branch to master
#49
arahuja
closed
9 years ago
1
Read alignment duplication in output
#48
cboursnell
closed
4 years ago
2
allow soft-masked ambiguous characters (fixes #46)
#47
blahah
closed
9 years ago
3
improper parsing of FASTQ records
#46
blahah
closed
9 years ago
4
fix EventTest, single waiter
#45
blahah
closed
9 years ago
3
alignments for read non-consecutive in output
#44
blahah
closed
9 years ago
4
fix OSX compilation by explicitly declaring flock as struct (fix #40)
#43
blahah
closed
9 years ago
4
Seg fault with -om 5
#42
macmanes
closed
9 years ago
5
SNAP name conflicts
#41
sjackman
closed
9 years ago
11
OSX compilation
#40
blahah
closed
9 years ago
5
why is -ku not default
#39
wm75
closed
9 years ago
3
snap not running with -t option of 1 or 2 on Mac OS X
#38
wm75
opened
9 years ago
0
multithreading problem on Mac OS X 10.10 Yosemite
#37
wm75
opened
9 years ago
2
mmap failed
#36
yunfeiguo
opened
10 years ago
1
[v1.0.0beta.13] deadlock
#35
blahah
closed
10 years ago
6
Parameter tuning?
#34
ryananeff
closed
9 years ago
1
OSX binaries behind other platforms
#33
blahah
closed
4 years ago
1
explicitly declare template argument
#32
blahah
opened
10 years ago
5
Compressed Input from process substitution (gzip or bz2) fails
#31
binarybana
closed
9 years ago
1
usage not completely printing for indexing option
#30
joecop
closed
10 years ago
2
removed duplicate definition in Compat.cpp
#29
gittaylor
closed
10 years ago
6
Build fixes for *nix
#28
fnothaft
closed
10 years ago
5
Fixes to enable SNAP to link and build on mac.
#27
fnothaft
closed
10 years ago
0
Providing incorrect fasta file to index results in segmentation violation when searching
#26
bamueh
closed
9 years ago
2
Why SNAP is not distributed naturally and does not support ADAM format directly?
#25
alartin
closed
4 years ago
9
Fixes recursive lock acquisition bug encountered on linux.
#24
fnothaft
opened
10 years ago
4
Integrate HDFS support
#23
jelson
closed
10 years ago
0
SNAP RNA-seq implementation
#22
andrewmagis
closed
11 years ago
0
Windows linebreaks lead to crash
#21
philippbayer
closed
11 years ago
2
Generate an error rather than failing when -d value is too large
#20
bolosky
closed
9 years ago
1
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