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biocore
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q2-qemistree
Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".
BSD 2-Clause "Simplified" License
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Removes _itol_metadata.py in favor of a QIIME2 visualization
#108
ElDeveloper
closed
4 years ago
0
Prune render
#107
anupriyatripathi
closed
4 years ago
1
allow prune hierarchy to prune by any other field or a list of feature names
#106
anupriyatripathi
closed
4 years ago
0
give an option to label and color by different fields in itol metadata
#105
anupriyatripathi
closed
4 years ago
0
ENH: Add standard error to command calls
#104
ElDeveloper
closed
4 years ago
0
convert itol functionality into qiime2 command
#103
qiyunzhu
closed
4 years ago
3
Adding a "enhance with Qemistree" to FBMN workflow
#102
DeepaAcharya
closed
4 years ago
1
Updated the README file to include _itol_metadata.py changes
#101
stephramos17
closed
4 years ago
0
convert _itol_metadata.py script to a qemistree module
#100
anupriyatripathi
closed
4 years ago
1
Tree fixes (Critical)
#99
anupriyatripathi
closed
4 years ago
0
Versioneering
#98
anupriyatripathi
closed
4 years ago
0
check both `Smiles` and `Compound_Name` for ms2 match
#97
anupriyatripathi
closed
4 years ago
0
Itol render
#96
anupriyatripathi
closed
4 years ago
0
prune hierarchy based on feature abundance and/or prevalence
#95
anupriyatripathi
opened
4 years ago
0
add RT and m/z in feature data output
#94
anupriyatripathi
closed
4 years ago
1
update README
#93
anupriyatripathi
closed
4 years ago
1
Classyfire updates
#92
anupriyatripathi
closed
4 years ago
1
added iToL bar chart function
#91
qiyunzhu
closed
4 years ago
3
add module to append new feature metadata to FeatureData[Molecules]
#90
anupriyatripathi
closed
4 years ago
0
update feature data to include more information from MS/MS library match
#89
anupriyatripathi
closed
4 years ago
0
Add a transformer from TSVMolecules to QIIME2 Metadata
#88
fedarko
closed
4 years ago
0
Fbmn fix
#87
anupriyatripathi
closed
4 years ago
0
Map feature abundances per metadata column on tree
#86
anupriyatripathi
closed
4 years ago
1
Make structure pop-ups in iTOL rendering
#85
anupriyatripathi
opened
4 years ago
0
Prune fix
#84
anupriyatripathi
closed
4 years ago
0
Ability to collate MS2 spectral matches from GNPS
#83
anupriyatripathi
closed
4 years ago
0
Readme
#82
anupriyatripathi
closed
4 years ago
0
Classyfire - WIP
#81
anupriyatripathi
closed
4 years ago
0
Hierarchy 2019.7
#80
anupriyatripathi
closed
4 years ago
0
Change hyphen to underscore in setup.py
#79
ElDeveloper
closed
4 years ago
1
data folder is not including when doing pip install
#78
mwang87
closed
4 years ago
1
Adding manifest file
#77
mwang87
closed
4 years ago
1
Qc fps
#76
anupriyatripathi
closed
4 years ago
3
Parentmz WIP
#75
anupriyatripathi
closed
5 years ago
1
Biom match
#74
tgroth97
closed
4 years ago
0
make zodiac step optional
#73
anupriyatripathi
closed
3 years ago
0
deleting old test data
#72
anupriyatripathi
closed
5 years ago
1
BLD: Fix Travis build to let the tests run
#71
ElDeveloper
closed
5 years ago
1
deleting old testdata
#70
anupriyatripathi
closed
5 years ago
1
Compress files in test-data
#69
ElDeveloper
closed
3 years ago
0
Reponame
#68
anupriyatripathi
closed
5 years ago
0
Update project name
#67
ElDeveloper
closed
5 years ago
1
add precursor mass matching before aggregating fingerprints
#66
anupriyatripathi
closed
4 years ago
0
Network integration and Summary of Fingerprints
#65
mwang87
closed
5 years ago
1
Expose max mz
#64
mwang87
closed
4 years ago
0
Expose parallelism
#63
mwang87
closed
5 years ago
0
output fingerprint based substructures
#62
anupriyatripathi
closed
4 years ago
0
tree visualization
#61
anupriyatripathi
closed
4 years ago
0
Save out per feature fingerprints as a new plugin operation
#60
mwang87
closed
4 years ago
0
Integrate network generation
#59
mwang87
closed
2 years ago
0
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