borevitzlab timestreamlib issues

borevitzlab / timestreamlib

DEPRECATED. Please use the current version of the TimeStream tools at https://gitlab.com/appf-anu/pyts2.

https://gitlab.com/appf-anu/pyts2

GNU General Public License v3.0

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issues

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Bump pyyaml from 3.11 to 5.4

#180 dependabot[bot] closed 3 years ago
2
Bump pillow from 2.6.1 to 8.1.1

#179 dependabot[bot] closed 3 years ago
2
Bump pillow from 2.6.1 to 6.2.0

#178 dependabot[bot] closed 3 years ago
1
Review PlantCV code and report back

#177 TimeScience opened 7 years ago
0
Resize naming busted

#176 Joelgranados opened 8 years ago
0
We cannot repeat pipe component in timestream.yml

#175 Joelgranados closed 7 years ago
0
Add "surface coverage" and "stockiness" to output phenotypes

#174 TimeScience opened 8 years ago
0
Create doc that clearly defines what each output phenotype means and how it is calculated

#173 TimeScience opened 8 years ago
0
Put info on AUDIT codes and code version into JSON @ start of audit file

#172 TimeScience closed 8 years ago
1
Add Code version Date And other metadata to Audit file

#171 TimeScience opened 8 years ago
2
CSV output files needs to have consistent headers

#170 TimeScience closed 8 years ago
1
Change output path of CSV files to "Results" folder in root

#169 TimeScience closed 8 years ago
1
Fix output names of CSV files

#168 TimeScience closed 8 years ago
1
Add the possibility of marking the pot edges once we have detected them

#167 Joelgranados opened 8 years ago
0
The pipeline examples are wrong

#166 Joelgranados opened 9 years ago
0
The csv component should add new headers

#165 Joelgranados closed 9 years ago
1
Notify Tim and Riyan once the pipeline is running again on BVZ0036

#164 TimeScience closed 9 years ago
1
Install timestreamlib in new NCI vm

#163 Joelgranados closed 9 years ago
1
WHY WERE SO MANY "BAD" POT NUMBERS THE SAME?

#162 Joelgranados closed 9 years ago
1
There are Na's in the last column of "BVZ0036-GC02L-C01~fullres-csv/BVZ0036-GC02L-C01~fullres-area.csv"

#161 Joelgranados closed 9 years ago
1
Output CSV needs correct pot numbers - THIS IS A BIG DEAL AND NEEDS TO BE FIXED ASAP

#160 TimeScience closed 9 years ago
4
numeric values in ~fullres-audit.csv file should be defined

#159 TimeScience closed 9 years ago
3
exif2timestream not working on phenocam server

#158 TimeScience closed 9 years ago
2
sha aec0099 causes the pipeline GUI to freeze

#157 kdm9 closed 7 years ago
1
Joel's latest changes

#156 kdm9 closed 9 years ago
1
Fix bugs and warnings

#155 kdm9 closed 9 years ago
1
Fix the copyright and licence details everywhere

#154 kdm9 closed 9 years ago
1
Remove the need for image files in tests.

#153 Joelgranados closed 9 years ago
1
Add tests that address strangeness in images

#152 Joelgranados closed 7 years ago
2
Make tests images as small as possible

#151 Joelgranados closed 9 years ago
3
Pipeline test and Misc fixes

#150 Joelgranados closed 9 years ago
7
[WIP] Inline image resize-on-writer

#149 kdm9 closed 9 years ago
8
Add scikit image dependencies to preinstall_requirements.txt

#148 kdm9 closed 9 years ago
6
pipeline GUI. Be able to paste path to text areas

#147 Joelgranados opened 9 years ago
0
in configuration file outstreams is redundant

#146 Joelgranados opened 9 years ago
1
Windows error on resize

#145 Joelgranados opened 9 years ago
3
Image causing segmentation fault

#144 Joelgranados opened 9 years ago
7
Create automatic help and documentation.

#143 Joelgranados closed 9 years ago
8
Add more characters to the derandomizer output

#142 Joelgranados opened 9 years ago
0
Repo/folder for all our 'pipeline.yml's

#141 kdm9 closed 7 years ago
0
Pipeline GUI/CLI seperation?

#140 kdm9 closed 7 years ago
3
Add a resizeAndWrite component

#139 Joelgranados closed 9 years ago
3
Miscellaneous commits to add to next

#138 Joelgranados closed 9 years ago
6
Check to see for exact options on the pipecompoents

#137 Joelgranados opened 9 years ago
0
Parallelised execution in run_pipeline.py

#136 kdm9 closed 7 years ago
7
derandomizer no longer works! please fix asap

#135 TimeScience closed 9 years ago
1
derandomizer - uncommitted changes on phenocam server

#134 TimeScience closed 9 years ago
2
Audit should be a separate component

#133 Joelgranados opened 9 years ago
0
configuration - raise exception when configuration reading error.

#132 Joelgranados closed 9 years ago
0
configuration - Periods are not allowed in the config file. make sure we check

#131 Joelgranados opened 9 years ago
0