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cmap
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cmapPy
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
https://clue.io/cmapPy/index.html
BSD 3-Clause "New" or "Revised" License
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Assertion Error occuring on "subsetting GCToo instances" part
#86
VangieY
opened
3 months ago
0
Parse isnt working when trying to read in cs_sig.gtcx from query results
#85
JManickam13
opened
9 months ago
0
API Use Cases
#84
faithtyuan
opened
9 months ago
0
Error in opening LINCS L1000 .gctx file
#83
songsong0425
closed
12 months ago
1
Unable to install pypi version of cmappy - no such file or directory 'pytz-2021.1.dist-info/METADATA''
#82
Zethson
closed
1 year ago
2
pypi release
#81
Zethson
opened
1 year ago
1
write_gct adds in the index column
#80
jnedzel
opened
1 year ago
0
Python 3.11 version
#79
pauleve
closed
1 year ago
0
Cannot write back GCT file that has been parsed
#78
Munchic
opened
2 years ago
1
Bug .GCT written by cmapPy on Windows have inconsistent line endings
#77
KarlClauser
opened
2 years ago
4
fix bug in write_gct for newest version of pandas; minor adjustments to reading writing gct/x
#76
dllahr
closed
2 years ago
0
cmapPy/pandasGEXpress/transform_gctoo.py
#75
dllahr
closed
3 years ago
0
Solving environment: failed
#74
antonkratz
opened
3 years ago
0
cmapPy/math/fast_corr.py and fast_cov.py: update these routines so they can accept 1D arrays as inputs
#73
dllahr
closed
3 years ago
0
Optimize gctx subsetting order for memory usage.
#72
darintay
closed
3 years ago
0
Subsetting picks wrong dimension to subset over first
#71
darintay
opened
3 years ago
1
Error in parsing
#70
DeepColin
opened
3 years ago
0
'utf-8' codec Error when parsing gctx
#69
Hoa-Lab
closed
3 years ago
1
GCTX parsing is not thread safe.
#68
nborunov-integral
opened
3 years ago
0
Error during parsing
#67
LeskosekRok
opened
3 years ago
3
CMap tutorial IPython notebook doesn't open
#66
deniseduma
closed
3 years ago
3
Cmap tutorial IPython notebook doesn't open in the browser
#65
deniseduma
opened
3 years ago
0
reading gctx from a non-fs file object
#64
idavydov
opened
4 years ago
1
parse_gctx takes too much memory when we inquire specific columns and rows
#63
Dom303
opened
4 years ago
2
mismatch between metadata and gctx
#62
ElyasMo
opened
4 years ago
0
Visualization subpackage added
#61
naviddianati
closed
4 years ago
0
can not read .gctx file
#60
benanbardak
closed
5 years ago
1
math.tests/fast_cov and fast_corr: added methods for calculating when nan's are present
#59
dllahr
closed
4 years ago
2
Issue #36 (add sort option for parse gctx)
#58
saksham219
closed
4 years ago
0
how I create a conda environment for cmapPy and python 3
#57
ghost
opened
5 years ago
1
Issue #55 numpy workaround fix
#56
saksham219
closed
5 years ago
1
pandasGEXpress.write_gctx id in gctx is null
#55
ghost
closed
5 years ago
5
Python3 compatible
#54
saksham219
closed
5 years ago
8
Parsing GCT files fails in python3
#53
saksham219
closed
5 years ago
1
ValueError: array is too big; `arr.size * arr.dtype.itemsize` is larger than the maximum possible size.
#52
FarshidShekari
closed
5 years ago
3
get row id in cmappy in gctx Files
#51
FarshidShekari
closed
5 years ago
1
cmapPy_pandasGEXpress_tutorial.ipynb fails to parse ids
#50
maxdrohde
closed
5 years ago
1
updated requests to version without security issue
#49
oena
closed
5 years ago
0
write_gct capable of writing invalid GCToo objects
#48
dedavison
closed
5 years ago
1
Convert .gctx file to .gct
#47
FarshidShekari
closed
5 years ago
7
Fix GCT file parsing in Python 3
#46
JDRomano2
closed
6 years ago
3
drastically reduce memory requirements for math.fast_cov & math.fast_corr
#45
dllahr
closed
6 years ago
1
Annotate gct/gctx files in gctx2gct and gct2gctx files
#44
AnupJonchhe
closed
6 years ago
0
Exception while parsing gct files
#43
Naghipourfar
closed
6 years ago
5
Significant speed up in pandasGEXpress
#42
TyberiusPrime
closed
6 years ago
1
better_parse_error
#41
adofficer
closed
6 years ago
1
Add annotating a gct/x as a command-line tool
#40
oena
closed
6 years ago
1
code to compute connectivity score
#39
FADHLyemen
opened
6 years ago
3
No module named cmap.io.gct
#38
liuguangdi
closed
6 years ago
2
write_gctx TypeError in Python 3.6
#37
alex-wenzel
closed
6 years ago
1
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