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deweylab
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RSEM
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
http://deweylab.biostat.wisc.edu/rsem/
GNU General Public License v3.0
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Execution failed: [Errno 2] No such file or directory
#117
zhou-ran
opened
5 years ago
4
Quantification and normalization for Targeted Gene Panel
#116
tushardave26
opened
5 years ago
0
Fragment XXX is hung over the end of transcript YYY!
#115
sklarz-bgu
closed
5 years ago
5
RSEM-v1.3.1: "make pRSEM" fails while loading GenomicRanges
#114
transcriptomics
opened
5 years ago
1
segfault in rsem-calculate-credibility-intervals
#113
giardine
opened
5 years ago
0
rsem-parse-alignments problem
#112
lybird300
closed
5 years ago
1
how does RSEM deal with the reads mapping to different genes?
#111
WTFnewlife
opened
5 years ago
1
Clipping and padding reads
#110
anaklaudia
opened
5 years ago
0
RSEM prepare reference from UCSC genome
#109
prabindm
opened
5 years ago
0
Obtain metadata for each read in simulation
#108
lynnyi
closed
5 years ago
1
rsem-plot-transcript-wiggles failing
#107
sdwien
opened
5 years ago
1
Run RSEM in SLURM Cluster
#106
patrick-douglas
opened
5 years ago
0
rsem-calculate-expression error SAM/BAM file declares more reference sequences than Rsem
#105
VilainLab
opened
5 years ago
0
Differences between .results file and .cnt file
#104
drkmj
opened
5 years ago
0
Number of alignable reads = 0
#103
bsun0802
closed
5 years ago
1
--gzipped-read-file should be --star-gzipped-read-file
#102
xizhihui
opened
5 years ago
4
convert-sam-for-rsem -p 12 --memory-per-thread 20G bowtie2.bam bowtie2.bam.for_rsem
#101
tomas-pluskal
opened
5 years ago
2
rsem-calculate-expression documentation page in read-me
#100
lucidif
opened
5 years ago
1
Plase check if you provide correct parameters/options for the pipeline!
#99
haoyanioz
opened
6 years ago
1
rsem-run-em: RefSeq.h:85: int RefSeq::get_id(int, int) const: Assertion `pos >= 0 && pos < totLen' failed.
#98
smm19900210
opened
6 years ago
2
Is there a solution to obtain a GTF transcriptome with RSEM?
#97
ogreyesp
opened
6 years ago
0
Make the code compile with C++17
#96
yasushi-saito
opened
6 years ago
0
convert-sam-for-rsem documentation inconsistency
#95
map2085
opened
6 years ago
0
C++11 fixes for clang
#94
siddharthab
closed
1 year ago
0
Error - line <> does not have attribute ...
#93
BioinformaticsBex
opened
6 years ago
0
rsem-gff3-to-gtf Fails on GFF3 file from NCBI
#92
winni2k
opened
6 years ago
7
rsem-prepare-reference: The GTF file might be corrupted!
#91
Lucas-Maciel
opened
6 years ago
0
Automatic quality scale detection
#90
uros-sipetic
opened
6 years ago
0
rsem-build-read-index: Please check if you provide correct parameters/options for the pipeline!
#89
ChenMorSays
opened
6 years ago
2
assignment statistics
#88
jamesdalg
closed
6 years ago
3
rsem-prepare-reference with a fasta transcript
#87
geparada
closed
6 years ago
1
rsem-prepare-reference error
#86
mroodgar
opened
6 years ago
3
Strandedness - automatic inference
#85
uros-sipetic
closed
6 years ago
2
rsem-prepare-reference
#84
fcamus
closed
6 years ago
1
RSEM rsem-parse-alignments problem
#83
reedliu
closed
6 years ago
2
alignments with inconsistent mate lengths!
#82
sommerJY
opened
6 years ago
1
Usage StringTie with non-stranded libraries
#81
sopenaml
opened
6 years ago
0
sum of expected_count 1/100th of sum of uniquely mapped reads
#80
patrickvdb
opened
6 years ago
0
Fix assertion error for arrays with lots of zeros.
#79
jenni-westoby
opened
6 years ago
0
miRNA and smallRNA pipeline
#78
andremrsantos
opened
6 years ago
1
RSEM gff3-to-gtf is givining errors
#77
sagnikbanerjee15
opened
6 years ago
0
How to get the final result?
#76
wangzhennan14
opened
6 years ago
0
Assertion error in rsem-simulate-reads
#75
jenni-westoby
closed
4 years ago
2
rsem-prepare-reference generate a chain file to liftover the SNP of Transcriptome to genome?
#74
wangyugui
closed
7 years ago
1
Bowtie v1.2.0 outputs interleaving read pairs
#73
brisk022
opened
7 years ago
2
Allow Use of BAM Files Mapped to a Genome
#72
DarioS
opened
7 years ago
0
rsem-calculate-expression error /lib/libc.so.6: version `GLIBC_2.14' not found
#71
yychangsd
opened
7 years ago
0
rsem-run-ebseq --ngvector failed with "subscript out of bounds".
#70
wangyugui
opened
7 years ago
2
can rsem-gff3-to-gtf NOT stop when some warning/error in refseq gff?
#69
wangyugui
opened
7 years ago
0
Allow User Specification of stat Folder Location
#68
DarioS
opened
7 years ago
0
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