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dib-lab
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elvers
(formerly eelpond) an automated RNA-Seq workflow system
https://dib-lab.github.io/elvers/
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CreateCondaEnvironmentException: Could not create conda environment from /VirSorter2/virsorter/rules/../envs/vs2.yaml
#163
lifeifeifeifei
closed
3 years ago
0
Hanging on setting up Trinity environment
#162
matthewabirk
opened
3 years ago
0
switch to thumper/charcoal-style click interface
#161
bluegenes
opened
4 years ago
0
stuck downloading packages when testing
#160
AntonioBaeza
opened
4 years ago
5
Update __main__.py
#159
maligang
closed
4 years ago
0
Salmon Version Errors
#158
zdellaert
opened
4 years ago
0
lastdb version 992 (dammit)
#157
zdellaert
opened
4 years ago
0
NameError: name 'pygments' is not defined
#156
olar785
opened
4 years ago
0
Can't add rules for extra target multiqc
#155
olar785
closed
4 years ago
1
Bump eslint from 4.18.1 to 4.18.2 in /mkdocs-material-dib
#154
dependabot[bot]
opened
4 years ago
1
finish bowtie2 rule
#153
bluegenes
opened
5 years ago
0
How to run DESeq2 with 3 treatments?
#152
matthewabirk
opened
5 years ago
3
Pandas was not already installed
#151
prvasquez
opened
5 years ago
0
another snakemake based toolkit
#150
ctb
opened
5 years ago
1
Error running dammit annotation
#149
prvasquez
closed
5 years ago
1
per-sample reference and sra-ftp utilities
#148
bluegenes
opened
5 years ago
0
--rerun-incomplete flag not working
#147
matthewabirk
opened
5 years ago
1
deseq2 not running as standalone
#146
matthewabirk
closed
5 years ago
0
suggestion, recorded tutorial
#145
johnsolk
opened
5 years ago
0
collapse get_data and get_reference into one rule
#144
taylorreiter
opened
5 years ago
2
enable list of sample names to use for trinity assembly
#143
bluegenes
closed
5 years ago
0
add cluster_cmd param
#142
bluegenes
closed
5 years ago
0
Default trimmomatic setting for Phred score cutoff?
#141
matthewabirk
closed
5 years ago
1
fix deseq2 conda env
#140
bluegenes
closed
5 years ago
4
Default trimmomatic adapter files with broken path
#139
matthewabirk
closed
5 years ago
1
modular versioning
#138
bluegenes
opened
5 years ago
0
better khmer
#137
bluegenes
opened
5 years ago
0
Pin version numbers in rule environment.yml files
#136
charlesreid1
closed
5 years ago
3
Pinning version numbers in rule environment.yml files
#135
charlesreid1
closed
5 years ago
6
fix print params
#134
bluegenes
closed
5 years ago
0
deseq parameter error
#133
prvasquez
closed
5 years ago
1
[WIP] Check inputs
#132
bluegenes
opened
5 years ago
0
use dammit annotations for DE (collapse "genes" based on annots)
#131
bluegenes
opened
5 years ago
5
[WIP] add tests for all rules
#130
bluegenes
closed
5 years ago
0
[WIP] specify workflows from config; add workflow checks
#129
bluegenes
closed
5 years ago
0
[WIP] specify workflows from config; add workflow checks
#128
bluegenes
closed
5 years ago
1
[WIP] add conda recipe and JOSS paper draft
#127
bluegenes
closed
5 years ago
0
[WIP] add error checking for some commonly observed problems, plus test cases
#126
ctb
opened
5 years ago
3
typo in rules/dammit/dammit-wrapper.py
#125
johnny3420
closed
5 years ago
1
simplify config merge and check?
#124
bluegenes
opened
5 years ago
0
can we trap snakemake Python tracebacks and output them to a file?
#123
ctb
opened
5 years ago
1
[MRG] add config validation, better input file finding
#122
bluegenes
closed
5 years ago
0
add conda recipe
#121
bluegenes
opened
5 years ago
0
only read in samples IF we need them
#120
bluegenes
closed
5 years ago
1
update conda envs
#119
bluegenes
opened
5 years ago
2
init get_reference rule
#118
bluegenes
closed
5 years ago
1
[WIP] enable cluster job submission
#117
bluegenes
closed
5 years ago
1
[MRG] introducing elvers! [but first, merge #99, 118, 120]
#116
bluegenes
closed
5 years ago
5
split tximport from deseq2
#115
bluegenes
opened
5 years ago
0
reference ARMOR
#114
ctb
opened
5 years ago
1
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