diskin-lab-chop AutoGVP issues

diskin-lab-chop / AutoGVP

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issues

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error in the dockerfile

#250 weizhu365 opened 1 month ago
0
Script missing

#249 nandobonf closed 3 months ago
5
Rjcorb/247 add clinvar check

#248 rjcorb closed 3 months ago
3
Feature request: ClinVar review status value check

#247 rjcorb closed 3 months ago
0
Update search criteria for clinvar conflicting variants

#246 rjcorb closed 4 months ago
0
Add published manuscript citation on README

#245 jharenza closed 4 months ago
1
Update germline-pathogenecity_flow.png to manuscript version

#244 jharenza closed 4 months ago
0
Update flow chart on readme

#243 jharenza closed 4 months ago
0
update 1NR variant classification to be compatible with new ClinVar nomenclature

#242 rjcorb closed 4 months ago
0
Dockerfile update --> autogvp 1.0.1

#241 jharenza closed 5 months ago
0
rm leading semicolon in variant_ids

#240 rjcorb closed 5 months ago
0
Security issue: Update dockerfile to R 4.4.0 and BioC to 3.19

#239 jharenza closed 5 months ago
0
remove leading semicolon from variant_ids column

#238 rjcorb closed 5 months ago
0
retain gnomad non-cancer AF popmax in final autogvp output

#237 rjcorb closed 5 months ago
0
Rjcorb/234 update variant ids col

#236 rjcorb closed 5 months ago
4
include gnomad_3_1_1_AF_non_cancer_popmax column in final output

#235 rjcorb closed 5 months ago
0
Feature request: Update `rs_id` column for readability

#234 jharenza closed 5 months ago
0
copy autogvp scripts to Dockerfile

#233 rjcorb closed 6 months ago
0
Add DOI for final submission to README

#232 jharenza closed 6 months ago
0
Feature request: add AutoGVP to project Dockerfile

#231 rjcorb closed 6 months ago
0
update docker image to v1.0.0

#230 jharenza closed 7 months ago
0
Add DOI to readme

#229 jharenza closed 6 months ago
0
Update wiki to include recommendation of filtering DP>0

#228 rjcorb closed 7 months ago
3
add lubridate to Dockerfile

#227 rjcorb closed 7 months ago
0
add lubridate R package to docker

#226 rjcorb closed 7 months ago
0
update README

#225 rjcorb closed 8 months ago
0
Update README with contact info, preprint link

#224 rjcorb closed 8 months ago
0
update select-clinvar-submissions.R to only consider P,LP,B,LB,VUS submissions

#223 rjcorb closed 7 months ago
2
Remove "association, risk factor" submissions when resolving conflicting interpretations

#222 rjcorb closed 7 months ago
0
Update germline-pathogenecity_flow.png

#221 jharenza closed 8 months ago
1
Add updated flow diagram

#220 jharenza closed 8 months ago
1
Add ClinVar origin columns to AutoGVP output

#219 rjcorb closed 8 months ago
0
fix submission file loading bug

#218 rjcorb closed 8 months ago
0
Feature request: add clinvar variant origin columns to autogvp output

#217 rjcorb closed 8 months ago
0
Bug: select-clinvar-submissions script commenting out rows containing "#" character

#216 rjcorb closed 8 months ago
0
update docker instructions in README

#215 rjcorb closed 8 months ago
0
Add updated docker instructions to README

#214 rjcorb closed 8 months ago
0
updated readme addressing reviewer comments

#213 naqvia closed 8 months ago
1
Update cavatica workflow to allow for input of external clinvar vcf

#212 rjcorb closed 8 months ago
0
Feature request: Add option to cavatica wf to allow for annotation with external clinvar vcf

#211 rjcorb closed 8 months ago
0
Fix broken link for column names

#210 jharenza closed 8 months ago
0
add cancer predisposition gene list

#209 rjcorb closed 10 months ago
0
add cancer predisposition gene list

#208 rjcorb closed 10 months ago
0
add all clinvar disease concept ID file

#207 rjcorb closed 10 months ago
1
Feature request: add all clinvar disease concept IDs list to repo

#206 rjcorb closed 10 months ago
0
Update docker commands to numeric

#205 jharenza closed 10 months ago
0
readme-update-with-wiki

#204 jharenza closed 10 months ago
1
Faq wiki

#203 naqvia closed 10 months ago
1
rm address_conflicting_interpretations() function and command

#202 rjcorb closed 10 months ago
0
Remove address_conflicting_interpretations() command

#201 rjcorb closed 10 months ago
0