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diskin-lab-chop
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AutoGVP
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add clinvar cols to abridged output
#200
rjcorb
closed
10 months ago
0
Feature request: add clinvar_flag, clinvar_variant_id, and clinvar_variant_link to abridged output
#199
rjcorb
closed
10 months ago
0
Update README.md - figure commit
#198
jharenza
closed
10 months ago
0
Update README.md
#197
jharenza
closed
11 months ago
0
Update germline-pathogenecity_flow.png
#196
jharenza
closed
11 months ago
3
Rjcorb/194 fix select submission bug
#195
rjcorb
closed
11 months ago
0
Bug: select-clinVar-submission.R does not pull clinsig call associated with concept ID
#194
rjcorb
closed
11 months ago
0
Flag conflicting clinvar variants with >= 1 P/LP submission in final output
#193
rjcorb
closed
11 months ago
0
add disease list, strategy options to select-clinVar-submissions.R
#192
rjcorb
closed
11 months ago
2
Feature request: flag clinvar variants with conflicting interpretation and >= 1 P/LP call
#191
rjcorb
closed
11 months ago
0
Feature request: add disease list and strategy options when resolving ClinVar conflicts
#190
rjcorb
closed
11 months ago
0
Save final ClinVar and InterVar calls for all variants
#189
rjcorb
closed
11 months ago
2
Feature request: save final calls from clinvar and intervar for all variants
#188
rjcorb
closed
11 months ago
0
add curl to Dockerfile
#187
rjcorb
closed
11 months ago
0
Feature request: add curl to Dockerfile
#186
rjcorb
closed
11 months ago
0
Update wrapper script conditionals and base directory
#185
rjcorb
closed
11 months ago
0
Update repo directory structure
#184
rjcorb
closed
11 months ago
1
Feature request: update directory structure
#183
rjcorb
closed
11 months ago
0
Feature request: trigger running of select-clinVar-submissions.R in wrapper script if output not available
#182
rjcorb
closed
11 months ago
0
Update README.md
#181
jharenza
closed
11 months ago
0
Add AD columns to output
#180
rjcorb
closed
11 months ago
0
Feature request: add allele counts to final output
#179
rjcorb
closed
11 months ago
0
Take original intervar call when PVS1=0
#178
rjcorb
closed
12 months ago
0
Bug: take original Intervar pathogenicity call for variants not adjusted by autopvs1
#177
rjcorb
closed
12 months ago
0
Include variant depth in final output
#176
rjcorb
closed
12 months ago
1
Feature request: include variant depth in final output
#175
rjcorb
closed
11 months ago
0
Rjcorb/173 add descriptive clinvar revstat
#174
rjcorb
closed
12 months ago
0
Feature request: create descriptive clinvar_review_status column
#173
rjcorb
closed
12 months ago
0
remove associated pheno criterion from ClinVar submission selection
#172
rjcorb
closed
1 year ago
0
Feature request: remove associated pheno criterion when selecting ClinVar submissions
#171
rjcorb
closed
1 year ago
0
merge P/LP and B/LB submissions when selecting consensus call
#170
rjcorb
closed
1 year ago
0
Feature request: merge P+LP and B+LB calls when identifying consensus call
#169
rjcorb
closed
1 year ago
0
remove submissions with no assertion criteria when selecting ClinVar calls
#168
rjcorb
closed
1 year ago
0
Bug: remove clinvar submissions with no assertion criteria
#167
rjcorb
closed
1 year ago
0
Feature request: Add VEP command
#166
naqvia
closed
11 months ago
4
replace %3D with = in HGVSp
#165
rjcorb
closed
1 year ago
0
Bug: synonymous variant HGVSp output
#164
rjcorb
closed
1 year ago
0
add sample id column to final output
#163
rjcorb
closed
1 year ago
0
Feature request: add sample ID column
#162
rjcorb
closed
1 year ago
0
update awk statement for INFO field extraction
#161
rjcorb
closed
1 year ago
0
Bug: some vcf INFO fields not being extracted
#160
rjcorb
closed
1 year ago
0
rename scripts
#159
rjcorb
closed
1 year ago
0
Feature request: rename scripts
#158
rjcorb
closed
1 year ago
0
Add output directory argument
#157
rjcorb
closed
1 year ago
1
Bug: fix out directory option
#156
rebkau
closed
1 year ago
0
Save criterion and adjusted evidence cols in final output
#155
rjcorb
closed
1 year ago
0
Bug: criterion, adjusted autopvs1 cols not retained in final output
#154
rjcorb
closed
1 year ago
0
Fix filtering in custom autogvp workflow to retain all variants
#153
rjcorb
closed
1 year ago
1
Bug: non-ClinVar variants filtered out when running custom workflow
#152
rjcorb
closed
1 year ago
0
add guess_max when loading files
#151
rjcorb
closed
1 year ago
0
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