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dynverse
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dyno
Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
https://dynverse.github.io/dyno
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error in infer_trajectory
#146
l-magnificence
opened
2 weeks ago
0
Caching models to work in HPC environments
#145
poloarol
opened
5 months ago
0
Error in `map_fun()`:
#144
hmlopezbertoni
opened
7 months ago
0
model <- infer_trajectory(dataset, ti_scuba(N_dim = 1L))
#143
guanghui-tan
opened
10 months ago
0
infer_trajectory(dataset, ti_scuba())
#142
Gh-Genetics
opened
10 months ago
0
cannot open the connection
#141
mavino
opened
1 year ago
4
The `name` provided ('clock-o') does not correspond to a known icon
#140
erzakiev
opened
1 year ago
0
Error with singularity
#139
Alunethy
opened
1 year ago
0
FATAL error using dyno on HPC with singularity
#138
FERWoods
opened
1 year ago
0
order of tile in heatmap
#137
bmyury
opened
1 year ago
0
Using dyno with Apple silicon
#136
EmanuelSoda
opened
2 years ago
5
add_root function
#135
TarekGharsalli
opened
2 years ago
1
infer_trajectories function
#134
TarekGharsalli
opened
2 years ago
0
Issue wrapping expression and counts matrix
#133
rtippalagama
opened
2 years ago
0
guidelines_shiny problem
#132
Hollandlu
opened
2 years ago
0
docker pull takes too long time
#130
yueli8
opened
2 years ago
0
How to use infer_trajectory with sif of kinds of trajectory inference function
#129
Liuxiaoqin95
opened
2 years ago
0
How to change the color when using plot_dimred?
#128
CromitDolores0808
opened
2 years ago
1
error when running celltree_maptpx
#127
ch8316f5eyu
opened
2 years ago
0
Fail to install dyno
#126
lh12565
opened
2 years ago
0
Use local container image
#125
Simon-chevolleau
opened
2 years ago
0
Error in detect_backend() : Couldn't detect docker or singularity. Are you sure either is installed?
#124
1378989
opened
2 years ago
2
Using plot_dimred to plot pathway score to trajectory
#123
CromitDolores0808
closed
2 years ago
0
Error: --dataset should contain a pathname of a .loom or .h5 file
#122
tianlt
opened
2 years ago
5
Error in "infer_trajectory"
#121
JarvanDi
opened
2 years ago
0
Documentation is very sparse, terms such as milestone, waypoint etc. are to be properly defined
#120
soumitrakp
opened
3 years ago
0
a problem with infer_trajectory
#119
Hiroki0905
opened
3 years ago
1
a problem of too long runtime
#118
Hiroki0905
opened
3 years ago
0
How to deal with the batch effect in dyno?
#117
Dragonlongzhilin
opened
3 years ago
0
weird plot with paga trajectory
#116
y-gao
opened
3 years ago
0
Batch Effect
#115
angarb
opened
3 years ago
1
Fail to run infer_trajectory(dataset, method()) on MAC
#114
subkhankul
opened
3 years ago
2
Error when using plot_dimred
#113
CromitDolores0808
closed
3 years ago
5
Error with plot_dimred when coloring by a feature
#112
TJonCooper
opened
3 years ago
3
plot_dimred() error
#111
Woqo
closed
3 years ago
1
Not able to infer_trajectory using any model with dynverse, Error in match.argError in match.arg(backend, choices = c("docker", "singularity")) : 'arg' should be one of “docker”, “singularity”
#110
ammarsabir15
closed
3 years ago
3
Error during trajectory inference
#109
SebRW
opened
3 years ago
1
infer_trajectory returns nothing
#108
alexQiSong
closed
3 years ago
1
How to infer trajectory using dynverse with UMAP coordinates
#107
rana2209
closed
3 years ago
0
Cannot install the package
#106
erikfel97
closed
3 years ago
2
fail to run infer_trajectory
#105
ch8316f5eyu
opened
3 years ago
9
Running dyno fails
#104
jingshuw
opened
3 years ago
1
I can obtain different results when I process my data through ti_slingshot or R package "Slingshot"
#103
chuiqin
opened
3 years ago
2
Plot 3D UMAP with PAGA
#102
Bio-data-tricks
opened
3 years ago
0
Different results of UMAP in dynverse and scanpy
#101
Bio-data-tricks
closed
3 years ago
0
root cell or milestone not provided, trying first outgoing milestone_id
#100
grimwoo
opened
3 years ago
1
How to construct a PAGA path ?
#99
Bio-data-tricks
closed
3 years ago
0
Wrap_expression function with non scRNAseq data
#98
Bio-data-tricks
closed
3 years ago
0
how to import existing umap into dyno
#97
wfma
closed
3 years ago
6
Dyno installation fails: tries to install "unknown package"
#96
mcsimenc
closed
3 years ago
2
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