edawson gfakluge issues

edawson / gfakluge

A C++ library and utilities for manipulating the Graphical Fragment Assembly format.

http://edawson.github.io/gfakluge/

MIT License

51 stars 20 forks source link

issues

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can't build

#72 8banzhuan opened 1 year ago
1
minor typo fix

#71 aafshinfard opened 2 years ago
0
Add sensible default for gfak ids --start-ids

#70 kdm9 closed 2 years ago
1
Read (b)gzipped GFA format files

#69 AndreaGuarracino opened 2 years ago
0
Parse GFA from standard input when using dash as a filename

#68 cartoonist closed 3 years ago
1
Remove broken path_elem constructor

#67 zwets closed 3 years ago
2
Extracting regions with a degree threshold

#66 Zethson opened 4 years ago
0
gfak::mmap_open opens O_RDWR

#65 tetron opened 4 years ago
2
Makefile:37: *** missing separator. Stop.

#64 JuFengWang opened 4 years ago
5
Bump streaming from main branch

#63 edawson opened 4 years ago
0
Create ccpp.yml

#62 edawson opened 4 years ago
0
Update tinyFA to latest submod version

#61 edawson closed 4 years ago
0
Update submodules

#60 cartoonist closed 4 years ago
2
Make build system more flexible

#59 mr-c closed 4 years ago
2
Update Makefile - make install bug fixed

#58 hnikaein closed 4 years ago
1
Remove std namespace pollution

#57 camillescott closed 4 years ago
2
Fix return

#56 adamnovak closed 5 years ago
0
Fix warnings

#55 cartoonist closed 4 years ago
0
Fix target paths to be installed

#54 cartoonist closed 4 years ago
0
Inline methods (and also memmapping I guess?)

#53 jeizenga opened 5 years ago
0
Add inline statements

#52 jeizenga closed 5 years ago
1
Header only library fails linking if included in >= 2 object files

#51 jeizenga opened 5 years ago
3
Use mem map to avoid loading paths

#50 ekg closed 5 years ago
1
Makefile (install): Run mkdir

#49 sjackman closed 5 years ago
1
extract: Outputs blank lines

#48 sjackman opened 5 years ago
1
Header only

#47 edawson closed 5 years ago
0
Compact the assembly graph [feature request]

#46 sjackman opened 5 years ago
0
[FEATURE REQUEST] Update diff to use MinHash-based sequence comparison

#45 edawson opened 5 years ago
0
Renumber segments [feature request]

#44 sjackman opened 5 years ago
1
[Feature request] GFAK trim - trim a graph by segment length

#43 edawson opened 5 years ago
6
JOSS submission updates

#42 edawson closed 6 years ago
0
Adapt to work with Apple Clang and Macports OpenMP

#41 adamnovak closed 6 years ago
1
fillseq: segfaults when GFA does not exist, succeeds when FASTA does not exist

#40 sjackman closed 6 years ago
2
Simplify Makefile

#39 sjackman opened 6 years ago
2
Makefile (CXXFLAGS): Add -Wall

#38 sjackman closed 6 years ago
3
fillseq: Output is not deterministic

#37 sjackman closed 6 years ago
13
Tag a stable release

#36 sjackman opened 6 years ago
4
Fix #34

#35 adamnovak closed 6 years ago
0
path_elem orientations are backward in GFA 0.1

#34 adamnovak closed 6 years ago
2
Build

#33 edawson closed 6 years ago
0
gfak build command

#32 edawson closed 6 years ago
2
fillseq

#31 edawson closed 6 years ago
0
GFA file of only gap records segfaults

#30 sjackman opened 6 years ago
5
Fix some low-hanging fruit

#29 asl closed 6 years ago
2
Reduce output RAM usage / Change the way << operator works

#28 edawson opened 6 years ago
1
Switch to faster split function

#27 edawson closed 6 years ago
1
Missing optional element in "L" line parsing

#26 edawson closed 6 years ago
1
Single exe+ docs

#25 edawson closed 6 years ago
1
Homebrew / Linuxbrew package

#24 sjackman closed 6 years ago
5
Single executable

#23 sjackman closed 6 years ago
1