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edickie
/
ciftify
The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
https://edickie.github.io/ciftify/
MIT License
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Does ciftify_recon_all only accept output from freesurfer?
#136
renxili
closed
4 years ago
2
ciftify_PINT_vertices command not found
#135
renxili
closed
4 years ago
4
Issue after ciftify_recon_all
#134
renxili
closed
4 years ago
0
trouble with mri_convert
#133
StephDocTUM
opened
4 years ago
4
Trouble with MSM
#132
StephDocTUM
opened
4 years ago
30
trouble running the example subjects
#131
renxili
closed
4 years ago
0
DKT atlas in ciftify_peaktable.py
#130
ghost
opened
4 years ago
1
Correct package name for scikit-learn
#129
jooh
closed
4 years ago
1
fmriprep cifti files vs ciftify cifti files?
#128
dkp
opened
5 years ago
2
Bump pillow from 5.4.1 to 6.2.0
#127
dependabot[bot]
closed
4 years ago
0
Returned error with mismatch between version of MSM and the config file
#126
helloTC
closed
4 years ago
8
Trouble getting vertex location info from ciftify_statclust_report
#125
dakotakliam
opened
5 years ago
0
unable to run ciftify using docker
#124
crchinfatt
opened
5 years ago
8
ciftify_recon_all --resample-to-T1w32k on completed ciftify output will not run
#123
asentis
closed
5 years ago
4
overlays of the functional volume and the pial surface error
#122
liuhas2004
opened
5 years ago
4
[ENC] various added tests and bug fixes
#121
edickie
closed
5 years ago
0
config load issue - yaml.load is deprecated
#120
oricon
opened
5 years ago
4
ENH: ignore bids validator
#119
josephmje
opened
5 years ago
0
ciftify_recon_all fails with mris_convert
#118
aaron-barbieriaghib
closed
5 years ago
2
Added test and deploy to docker and pypi functionality to circleci
#117
mmanogaran
closed
5 years ago
0
ciftify_statclust_report's csv report is inaccurate when other resolution surfaces file served
#116
YaoMeng94
opened
5 years ago
3
ciftify_statclust_report can't run with options served
#115
YaoMeng94
closed
5 years ago
4
Binder Fix
#114
mmanogaran
closed
5 years ago
0
No preprocessed derivative for bold found
#113
ghost
closed
5 years ago
17
Added quotation marks in docs to fix docopt bug and modified recon_all to work with --dry-run properly
#112
mmanogaran
closed
5 years ago
0
Minor problem regarding MSM config in ciftify_recon_all
#111
ymstmshr
closed
5 years ago
3
Fix verbose flag in descriptor + invalidate Docker cache via GitHub versioning
#110
jerdra
closed
5 years ago
0
[ENC] add boutique spec and drop nose requirement for tests
#109
edickie
closed
5 years ago
0
[ENH] add read xfm option to ciftify_recon_all
#108
edickie
closed
5 years ago
0
Adding fALFF script
#107
delaneyjohnston
closed
5 years ago
0
merging in less vulnerable bits
#106
edickie
closed
5 years ago
0
Fix clean img bugs
#105
edickie
closed
5 years ago
0
Fix cifti_vis_PINT plotting bugs
#104
edickie
closed
5 years ago
0
help...Can I save the connectome file or seed correlation map not only the picture in the cifti_vis_PINT ?
#103
YaoMeng94
closed
5 years ago
4
[ENC] catch up with fmriprep
#102
edickie
closed
5 years ago
0
write up new documentation about BIDS RC1 reading
#101
edickie
closed
5 years ago
1
deal with collections.abc warnings
#100
edickie
opened
5 years ago
0
multiproc accross hemispheres to spead up ciftify_recon_all
#99
edickie
opened
5 years ago
0
need to find FSL template from templateflow..
#98
edickie
closed
5 years ago
1
not running... probably a beginner's mistake.
#97
jcrdubois
closed
5 years ago
4
bug - ciftify_clean_img fails when no confounds modelled
#96
edickie
opened
5 years ago
0
Adding fsl bbr to ciftify_subject_fmri
#95
edickie
closed
6 years ago
0
MSMsulc files not found within singularity image
#94
ljhearne
closed
6 years ago
4
Image generated by docker/singularity has issue importing python module
#93
ljhearne
closed
6 years ago
2
additions to QA views
#92
edickie
opened
6 years ago
0
Bugfixes runscript
#91
edickie
closed
6 years ago
0
allow freesurfer license to be arg for ciftify_recon_all
#90
edickie
closed
6 years ago
1
Updates to address small bugs with seedcorr
#89
edickie
closed
6 years ago
0
resample to 32k is not resampling to native
#88
edickie
closed
6 years ago
1
ciftify_clean_img not accept n/a
#87
colinhawco
closed
6 years ago
1
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