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ewels
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clusterflow
A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
https://ewels.github.io/clusterflow/
GNU General Public License v3.0
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Made modules specify requirement for reference annotation
#76
ewels
closed
8 years ago
0
Have genome details available in modules
#75
ewels
closed
8 years ago
3
Add annotation requirement to module api
#74
ewels
closed
8 years ago
0
ChIP-seq pipeline update
#73
orzechoj
closed
8 years ago
1
Feature requests
#72
s-andrews
closed
8 years ago
1
Pipeline / Module repository
#71
ewels
opened
8 years ago
4
Clusterflow with MultiQC
#70
darogan
closed
8 years ago
9
Torque compatibility
#69
jrkirk61
closed
8 years ago
4
Loading modules for deeptools and phantomqualpeaktools
#68
orzechoj
closed
8 years ago
2
Special value for @environment_module_alias to allow 'no module'
#67
ewels
closed
9 years ago
1
6 new modules, 1 new pipeline6 new modules, 1 new pipeline6 new modul…
#66
orzechoj
closed
9 years ago
6
Split website into its own repository
#65
ewels
closed
9 years ago
1
Sum queued download tasks
#64
ewels
closed
9 years ago
5
Support multiple outputs
#63
ewels
opened
9 years ago
0
v0.4devel Merge
#62
ewels
closed
9 years ago
0
Errors generated by summary modules are not highlighted
#61
ewels
closed
9 years ago
0
Add support for running summary modules on command line
#60
ewels
closed
9 years ago
0
Create a test to run once installed
#59
ewels
closed
9 years ago
2
Genomes wizard BWA bug
#58
ewels
closed
9 years ago
1
Build UPPMAX jobstats module
#57
ewels
opened
9 years ago
0
Param passing rewrite
#56
ewels
closed
9 years ago
0
Change downloads module behaviour
#55
ewels
closed
9 years ago
2
Make UPPMAX genomes file
#54
ewels
closed
9 years ago
3
Perl error
#53
robinandeer
closed
9 years ago
0
cf --setup broken
#52
robinandeer
closed
9 years ago
0
RSeQC
#51
ewels
opened
9 years ago
2
featureCounts
#50
ewels
closed
9 years ago
1
Write methylation coverage analysis module
#49
ewels
opened
9 years ago
3
methylkit module
#48
ewels
closed
9 years ago
2
Rewrite job negotiation / module command line handling
#47
ewels
closed
9 years ago
4
Add command line flag for running locally
#46
ewels
closed
9 years ago
0
Specify expected time for modules
#45
ewels
closed
9 years ago
9
Stop cf from outputting every file name at launch
#44
ewels
closed
9 years ago
1
Write UPPMAX-specific install wizard
#43
ewels
closed
9 years ago
2
Add config option for job parallelisation
#42
ewels
closed
9 years ago
2
Star
#41
stu2
closed
9 years ago
3
Star
#40
stu2
closed
9 years ago
0
htseq_counts cannot accept gtf files with 'gene_id' field
#39
stu2
closed
9 years ago
6
Add @merge_regex option to config
#38
ewels
closed
9 years ago
6
Update documentation
#37
ewels
closed
8 years ago
4
Simplify command line flags
#36
ewels
closed
9 years ago
3
Extend --make_config into --setup
#35
ewels
closed
9 years ago
1
Add HPC option for local machine
#34
ewels
closed
9 years ago
3
Move --qstatcols to config
#33
ewels
closed
9 years ago
3
Add contributing instructions.
#32
ewels
closed
9 years ago
0
Add submitted job IDs to a log file
#31
FelixKrueger
closed
9 years ago
14
Write HTML log e-mail to file.
#30
ewels
closed
9 years ago
1
Use command line argument flags instead of positions for modules
#29
ewels
closed
9 years ago
3
Clean up unrecognised output
#28
ewels
closed
9 years ago
0
Merging Simon's BI changes back to 0.4 development branch
#27
ewels
closed
9 years ago
2
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