g2nb igv-jupyter issues

g2nb / igv-jupyter

Extension for Jupyter which integrates igv.js

MIT License

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issues

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Support for JupyterHub 4?

#52 ecederstrand opened 1 month ago
1
Trouble loading azure or local crams

#51 kateelliottarc opened 3 months ago
1
1.0.0 release not tagged

#50 twrightsman closed 2 years ago
1
Update command-line flags for labextension enable

#49 twrightsman closed 2 years ago
0
Problems loading GTF file

#48 sagnikbanerjee15 closed 2 years ago
2
export information of a variant

#47 asmlgkj closed 2 years ago
2
.show() produces no output when offline

#46 sigurjonaxel closed 2 years ago
2
Problems using files/ to access local .fa file

#45 mezarque closed 2 years ago
6
Feature Request: Support for ROI

#44 Sammi-Smith closed 2 years ago
4
`.show()` produces no output

#43 jamesbaye closed 3 years ago
1
"Error accessing resource: presigned url Status:0" when trying to load presigned url to igv-jupyter

#42 JoannaTan closed 3 years ago
2
IGV Browser with local reference genome fasta file

#41 Irsan88 closed 3 years ago
8
"Error loading track data" in Jupyter notebook when trying to load local BAM file

#40 enushi closed 3 years ago
13
b.show() AttributeError: 'NoneType' object has no attribute 'session'

#39 cccnrc closed 3 years ago
6
Feature Request: Support for JupyterLab

#38 jonn-smith closed 3 years ago
4
problems when editing output SVG file in Illustrator

#37 rysterzhu closed 3 years ago
3
Entire extend of the deletion not highlighted in notebook

#36 vkullu closed 3 years ago
3
Unable to Load Local Bam File

#35 callieboskin closed 3 years ago
3
How to use other fasta file as the reference

#34 Sotdo closed 3 years ago
1
bam file won't display

#33 njbernstein closed 4 years ago
6
Queue

#31 jrobinso closed 4 years ago
0
Added message queue to Browser class

#30 tmtabor closed 4 years ago
0
IGV Browser not ready

#29 vanetten closed 4 years ago
27
Error when running show()

#28 dakomura closed 4 years ago
2
Extensions enabled, but .show() .load_track() don't work

#27 JasonJWilliamsNY closed 4 years ago
2
Enable trackclick events in igv-jupyter

#26 pwrose closed 4 years ago
1
Specify local file paths outside the project folder

#25 khourhin closed 4 years ago
5
Compatibility with JupyterHub

#24 tmtabor closed 5 years ago
0
'IGV Browser not ready'

#23 sooheelee closed 5 years ago
30
multiple bigwigs in one track?

#22 sunworshipper closed 5 years ago
2
Install and enable igv.js nbextension automatically with PIP install

#21 tmtabor closed 5 years ago
1
Running a demo on MyBinder

#20 psychemedia closed 4 years ago
9
Updates to igvjs and dev_install.sh to fix layout and development.

#19 turner closed 5 years ago
0
Fix Layout Issues.

#18 turner closed 5 years ago
2
Various display improvement suggestions

#17 a-slide closed 4 years ago
2
Pythonisation

#16 a-slide closed 4 years ago
0
Add image output API

#15 jrobinso closed 5 years ago
6
V2

#14 jrobinso closed 5 years ago
0
Install igv on Jupyter lab

#13 amirshams84 closed 4 years ago
10
Solution for notebook sharing with embed IGV widget

#12 a-slide closed 4 years ago
4
Changing References does nothing

#11 ijoseph closed 5 years ago
6
cannot install jupyter with conda

#10 dridk closed 5 years ago
2
BigWig files visualization using built-in Jupyter server

#9 NemanjaVucic90 closed 5 years ago
16
Bam reads are cutoff

#8 jfear closed 5 years ago
10
Can't access local file: range-byte header ignored

#7 jfear closed 7 years ago
6
jupyter notebook igv, doubleClickDelay=1 does not disable "double click to zoom"

#6 paul-shannon closed 7 years ago
11
Passing over GRanges to IGV.js

#5 KhagayN closed 7 years ago
1
how would I actually view the plot?

#4 KhagayN closed 7 years ago
9
Rename "search_track" to "search" and update comment

#3 jrobinso closed 7 years ago
1
igv.js in a notebook: specify track from, eg, a pandas (bed-like) data.frame

#2 paul-shannon closed 7 years ago
9