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geneontology
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obographs
Basic and Advanced OBO Graphs: specification and reference implementation
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running mvn package doesn't work on Java 11
#58
balhoff
closed
1 year ago
1
Update travis jdk.
#57
balhoff
closed
4 years ago
0
Update travis jdk.
#56
balhoff
closed
4 years ago
1
Add gpg arguments for Maven release to work on MacOS 10.14.
#55
balhoff
closed
4 years ago
0
Create maven central release for fix of missing synonym type
#54
pnrobinson
closed
4 years ago
4
Adding synonym type. Fixes #38
#53
cmungall
closed
4 years ago
0
Check round-trip JSON <-> Object model is possible
#52
julesjacobsen
closed
4 years ago
1
Add second order annotations
#51
cmungall
opened
4 years ago
0
Help needed: oboInOwl spec vs obographs
#50
matentzn
opened
4 years ago
2
Casting error needs to be more informative
#49
matentzn
opened
4 years ago
3
Missing property nodes for preds in go basic
#48
MrCreosote
opened
4 years ago
0
Sort JSON serialisation of obographs
#47
matentzn
closed
1 year ago
29
Improve semantics of synonym types and subset defs
#46
althonos
opened
4 years ago
1
Fix `RO`-derived URL error in examples
#45
althonos
closed
4 years ago
1
Annotations on xref annotation assertions are not serialized in json
#44
cmungall
opened
5 years ago
5
serializing to JSON leads to OutOfMemory exception
#43
saramsey
closed
1 year ago
2
Standard order of JSON serialization
#42
beckyjackson
closed
2 years ago
3
FromOwl.generateGraph class cast exception
#41
beckyjackson
closed
1 year ago
1
Added missing Meta.getDeprecated()
#40
julesjacobsen
closed
5 years ago
4
Multiple inheritance not parsed to JSON
#39
danielapoliveira
closed
5 years ago
2
Include synonym types
#38
cmungall
closed
4 years ago
1
Null pointer with Node.getType()
#37
pnrobinson
closed
1 year ago
3
Add getType() on node
#36
cmungall
closed
6 years ago
0
Add examples on how to reconstruct obo alt_ids
#35
cmungall
opened
6 years ago
0
Added codes that interpret objects of property rdfs:subClassOf as nodes
#34
yy20716
closed
3 years ago
0
About getting nodes in obographs
#33
yy20716
opened
6 years ago
4
Added a getter method for the field Deprecated in Meta
#32
yy20716
closed
3 years ago
0
No getter method exists for the variable deprecated in Meta
#31
yy20716
opened
6 years ago
0
Improve documentation on IDs/URIs
#30
cmungall
opened
6 years ago
0
Commentary on obographs proposal (@kltm)
#29
kltm
opened
7 years ago
3
Inconsistency between go-plus.json and go-plus.owl/obo
#28
tonysawfordebi
closed
6 years ago
2
ncbitaxon_import.owl missing some classes
#27
tonysawfordebi
opened
7 years ago
1
Property node missed for http://xmlns.com/foaf/0.1/depicts
#26
dosumis
opened
7 years ago
1
AnnotationAssertionAxioms should retain annotations
#25
cmungall
opened
7 years ago
0
Add some way to distinguish object properties from annotation properties
#24
dosumis
opened
7 years ago
3
obographs 2 OWL conversion
#23
dosumis
opened
7 years ago
4
References associated with taxon constraints are missing from go-plus.json
#22
tonysawfordebi
opened
7 years ago
3
GCIs in obographs
#21
dosumis
opened
7 years ago
1
Over-enthusiastic escaping of double quotes?
#20
tonysawfordebi
closed
7 years ago
2
Mapped rdfs:comment
#19
cmungall
closed
7 years ago
0
Term comments not present in go-plus.json
#18
tonysawfordebi
closed
7 years ago
3
Mapping owl:deprecated
#17
cmungall
closed
7 years ago
0
Consider unabbreviated field names for node labels and edge fields (lbl, sub, obj)
#16
cmungall
opened
7 years ago
2
Update README.md
#15
cmpich
closed
7 years ago
2
Implement ID/CURIE<->URI expansion and contraction
#14
cmungall
opened
7 years ago
5
Define mapping for obsoletion/deprecation
#13
cmungall
closed
7 years ago
1
Implement hasValue and anon class assertion mappings
#12
cmungall
opened
7 years ago
0
Define behavior when punning is used
#11
cmungall
opened
7 years ago
2
owl versionIRI should be mapped
#10
cmungall
closed
7 years ago
0
Gather feedback from developers of bioinformatics tools that consume ontology files
#9
cmungall
opened
7 years ago
2
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