geneontology obographs issues

geneontology / obographs

Basic and Advanced OBO Graphs: specification and reference implementation

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Issue #47 sort OWLAxioms in FromOwl

#62 julesjacobsen closed 4 years ago
0
EquivalentNodesSet.representativeNodeId() is not used in production code

#61 julesjacobsen opened 4 years ago
1
Consider using immutables for core classes

#60 julesjacobsen closed 1 year ago
13
Json deserialise

#59 julesjacobsen closed 4 years ago
1
running mvn package doesn't work on Java 11

#58 balhoff closed 1 year ago
1
Update travis jdk.

#57 balhoff closed 4 years ago
0
Update travis jdk.

#56 balhoff closed 4 years ago
1
Add gpg arguments for Maven release to work on MacOS 10.14.

#55 balhoff closed 4 years ago
0
Create maven central release for fix of missing synonym type

#54 pnrobinson closed 4 years ago
4
Adding synonym type. Fixes #38

#53 cmungall closed 4 years ago
0
Check round-trip JSON <-> Object model is possible

#52 julesjacobsen closed 4 years ago
1
Add second order annotations

#51 cmungall opened 5 years ago
0
Help needed: oboInOwl spec vs obographs

#50 matentzn opened 5 years ago
2
Casting error needs to be more informative

#49 matentzn opened 5 years ago
3
Missing property nodes for preds in go basic

#48 MrCreosote opened 5 years ago
0
Sort JSON serialisation of obographs

#47 matentzn closed 2 years ago
29
Improve semantics of synonym types and subset defs

#46 althonos opened 5 years ago
1
Fix `RO`-derived URL error in examples

#45 althonos closed 5 years ago
1
Annotations on xref annotation assertions are not serialized in json

#44 cmungall opened 5 years ago
5
serializing to JSON leads to OutOfMemory exception

#43 saramsey closed 1 year ago
2
Standard order of JSON serialization

#42 beckyjackson closed 2 years ago
3
FromOwl.generateGraph class cast exception

#41 beckyjackson closed 2 years ago
1
Added missing Meta.getDeprecated()

#40 julesjacobsen closed 6 years ago
4
Multiple inheritance not parsed to JSON

#39 danielapoliveira closed 6 years ago
2
Include synonym types

#38 cmungall closed 4 years ago
1
Null pointer with Node.getType()

#37 pnrobinson closed 1 year ago
3
Add getType() on node

#36 cmungall closed 6 years ago
0
Add examples on how to reconstruct obo alt_ids

#35 cmungall opened 6 years ago
0
Added codes that interpret objects of property rdfs:subClassOf as nodes

#34 yy20716 closed 3 years ago
0
About getting nodes in obographs

#33 yy20716 opened 6 years ago
4
Added a getter method for the field Deprecated in Meta

#32 yy20716 closed 3 years ago
0
No getter method exists for the variable deprecated in Meta

#31 yy20716 opened 6 years ago
0
Improve documentation on IDs/URIs

#30 cmungall opened 7 years ago
0
Commentary on obographs proposal (@kltm)

#29 kltm opened 7 years ago
3
Inconsistency between go-plus.json and go-plus.owl/obo

#28 tonysawfordebi closed 7 years ago
2
ncbitaxon_import.owl missing some classes

#27 tonysawfordebi opened 7 years ago
1
Property node missed for http://xmlns.com/foaf/0.1/depicts

#26 dosumis opened 7 years ago
1
AnnotationAssertionAxioms should retain annotations

#25 cmungall opened 7 years ago
0
Add some way to distinguish object properties from annotation properties

#24 dosumis opened 7 years ago
3
obographs 2 OWL conversion

#23 dosumis opened 7 years ago
4
References associated with taxon constraints are missing from go-plus.json

#22 tonysawfordebi opened 7 years ago
3
GCIs in obographs

#21 dosumis opened 7 years ago
1
Over-enthusiastic escaping of double quotes?

#20 tonysawfordebi closed 7 years ago
2
Mapped rdfs:comment

#19 cmungall closed 7 years ago
0
Term comments not present in go-plus.json

#18 tonysawfordebi closed 7 years ago
3
Mapping owl:deprecated

#17 cmungall closed 7 years ago
0
Consider unabbreviated field names for node labels and edge fields (lbl, sub, obj)

#16 cmungall opened 7 years ago
2
Update README.md

#15 cmpich closed 7 years ago
2
Implement ID/CURIE<->URI expansion and contraction

#14 cmungall opened 8 years ago
5
Define mapping for obsoletion/deprecation

#13 cmungall closed 7 years ago
1

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