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globalbioticinteractions
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nomer
maps identifiers and names to other identifiers and names
GNU General Public License v3.0
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Genbank Fixer Upper - Genbank Taxonomic Updater
#145
jhpoelen
opened
1 year ago
4
add support for http://hesperomys.com/
#144
jhpoelen
opened
1 year ago
17
facilitate name matching by adding ability to "stem" names to help match gendered names
#143
jhpoelen
closed
4 months ago
51
I'd like to integrate the name alignment tool into my R script
#142
jhpoelen
opened
1 year ago
3
add support for aligning with Mammal Diversity Database https://mammaldiversity.org
#141
jhpoelen
closed
1 year ago
4
unexpected crash on parsing "unparsable" name [ad64ad57 a281 e b398 dddc7e953]
#140
jhpoelen
closed
1 year ago
0
revisit support for EOL's https://opendata.eol.org/dataset/identifier-map
#139
jhpoelen
opened
1 year ago
2
TPT taxonomy - assume that when acceptedNameUsage is populated that the name is a synonym
#138
jhpoelen
closed
1 year ago
3
expose taxonomic hierarchy inference made by GBIF parser
#137
jhpoelen
closed
1 year ago
7
Unrecognized Hybrids in Taxonomy
#136
jtmiller28
opened
1 year ago
0
New matcher to use Brazilian Flora 2020
#135
zedomel
opened
1 year ago
3
Discoverlife subgenus names
#134
seltmann
closed
6 months ago
4
change name relations for Plazi from SAME_AS to OCCURS_IN
#133
jhpoelen
closed
1 year ago
2
suggest to index International Commission on Zoological Nomenclature (ICZN) Offical Index of Rejected and Invalid Specific Names as well as ICZN Official List of Specific Names in Zoology
#132
jhpoelen
opened
1 year ago
0
nomer itis incorrectly claims that Mormoops blainvillei is a synonym of Mormoops blainvillii - according to itis, it is the other way around
#131
jhpoelen
closed
1 year ago
5
include authorship in ITIS/GBIF index
#130
jhpoelen
closed
1 year ago
1
nomer 0.4.3 IOException when try to use globi-taxon-rank
#129
zedomel
closed
2 years ago
4
Parsing Names in a Hierarchical Fashion
#128
jtmiller28
opened
2 years ago
3
unexpected duplicates when matching [Homo sapiens] against ott
#127
jhpoelen
closed
2 years ago
6
plazi treatment indexer stops prematurely with java.lang.NoClassDefFoundError: org/apache/commons/codec/digest/MurmurHash3
#126
jhpoelen
closed
2 years ago
3
unexpected error on matching Homo sapiens against GloBI taxon graph
#125
jhpoelen
closed
2 years ago
2
inconsistent name alignment review for [Aglais io] using different versions of Catalogue of Life matcher
#124
jhpoelen
closed
2 years ago
13
when parsing names, consider Benichou L, Buschbom J, Campbell M, Hermann E, Kvacek J, Mergen P, Mitchell L, Rinaldo C, Agosti D (2022) Joint statement on best practices for the citation of authorities of scientific names in taxonomy by CETAF, SPNHC and BHL. Research Ideas and Outcomes 8: e94338.
#123
jhpoelen
opened
2 years ago
14
OpenBiodiv returns http code 401 (unauthorized) when requesting query results
#122
jhpoelen
opened
2 years ago
9
How to use nomer behind a proxy?
#121
zedomel
closed
5 months ago
8
Including family as an output using properties
#120
jtmiller28
closed
2 years ago
5
Toxicodendron oligophyllum is included in COL, but does not match [nomer append col]
#119
jhpoelen
closed
2 years ago
4
add support for Mammals Species of the World v3
#118
jhpoelen
opened
2 years ago
2
suggest to support checklistbank
#117
jhpoelen
opened
2 years ago
3
,
#116
BarbaraMeulenbelt
closed
2 years ago
0
suggest to support people name alignment re: The disambiguation of people names in biological collections
#115
jhpoelen
opened
2 years ago
2
suggest to use RCC5 logic theory to communicate taxonomic alignments: https://cs.gonzaga.edu/faculty/bowers/papers/bowers-onisw-08.pdf
#114
jhpoelen
opened
2 years ago
37
http://graph.openbiodiv.net/repositories/OpenBiodiv2020 does not appear to respond to queries
#113
jhpoelen
closed
2 years ago
1
Suggest to include authorship past name parsing gn-parse, gbif-parse
#112
jtmiller28
closed
2 years ago
7
currently default nomer cache dir is ./.nomer (working dir), suggest to use $HOME/.cache/nomer/ instead.
#111
jhpoelen
closed
2 years ago
1
Multiple Author Retrieval
#110
jtmiller28
closed
2 years ago
10
extract name relations used in synospecies
#109
jhpoelen
opened
2 years ago
0
suggest to add support for mapping names to distribution maps
#108
jhpoelen
opened
2 years ago
1
gn-parse makes designations into hybrids, tripping nomer to fail in resolution
#107
jtmiller28
opened
2 years ago
10
Subspecies: designation as ssp. will trip alignment to NONE
#106
jtmiller28
closed
2 years ago
1
Support for misspellings in Nomer?
#105
jtmiller28
opened
2 years ago
7
Inclusion of Authorship effect on name resolution?
#104
jtmiller28
closed
2 years ago
11
wfo returning concerning warnings
#103
jtmiller28
closed
2 years ago
7
suggest to turn https://www.wikidata.org/wiki/Property:P7715 (World of Flora Online) into an identifier for taxa
#102
jhpoelen
closed
2 years ago
3
nomer crashes on [nomer ls wfo]
#101
jhpoelen
closed
2 years ago
2
accepting suggestions on how to handle "doubtful" name relations
#100
jhpoelen
opened
2 years ago
33
support matching against USDA Plants - USDA
#99
jhpoelen
opened
2 years ago
0
suggest to support matching against World Checklist of Vascular Plants - WCVP
#98
jhpoelen
opened
2 years ago
0
support to match names against https://ucjeps.berkeley.edu/eflora/
#97
jhpoelen
closed
2 years ago
3
add support for world of flora online
#96
jhpoelen
closed
2 years ago
5
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