griffithlab civicpy issues

griffithlab / civicpy

A python interface for the CIViC db application

MIT License

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issues

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therapy names aren't unique per Evidence, and Disease property field sometimes is not there

#153 abidalikashi opened 2 weeks ago
2
update build status badge

#152 acoffman closed 3 weeks ago
0
Update civicpy to support all types of Features

#151 susannasiebert opened 4 weeks ago
0
Remove reference to secondary coordinates

#150 susannasiebert closed 1 month ago
0
Update queries and query parsing to work with new variant coordinate schema

#149 susannasiebert closed 1 month ago
0
civicpy cache truncated?

#148 zhanyinx closed 1 month ago
7
Update graphql queries to work with newly released feature schema

#147 susannasiebert closed 7 months ago
0
cicd: update release.yaml to use pypi trusted publisher

#146 korikuzma closed 7 months ago
0
Update pypi release to use trusted publisher

#145 korikuzma closed 7 months ago
0
feat: include molecular profile segment data in molecular profile response

#144 korikuzma closed 7 months ago
1
Add molecular profile component operators

#143 jsstevenson closed 7 months ago
1
Handle stale remote caches

#142 susannasiebert opened 1 year ago
0
civic.load_cache() is broken

#141 mapo9 closed 1 year ago
2
fix: stay compatible with pandas >=2.0

#140 dameyerdave closed 7 months ago
1
Bump ipython from 7.17.0 to 8.10.0

#139 dependabot[bot] opened 1 year ago
0
Bump jupyter-core from 4.6.3 to 4.11.2

#138 dependabot[bot] opened 1 year ago
0
1.1

#137 ahwagner closed 1 year ago
0
WIP: civicpy compatability with molecular profiles

#136 acoffman closed 1 year ago
0
Bump certifi from 2020.6.20 to 2022.12.7

#135 dependabot[bot] opened 1 year ago
0
search_variants_by_coordinates() does not work (v2.0.0)

#134 mapo9 closed 2 years ago
2
fix: gh actions docker depends on pypi release

#133 korikuzma closed 2 years ago
0
Have docker image creation depend on pypi release for GH Actions

#132 korikuzma closed 2 years ago
0
Make official v2 release + gh action for docker image

#131 korikuzma closed 2 years ago
3
add github action to make pypi release when a release is made on github

#130 korikuzma closed 2 years ago
1
Improve collaboration

#129 dameyerdave closed 2 years ago
0
Update civicpy to work with the new CIViC API

#128 korikuzma closed 2 years ago
3
WIP:Update civicpy to work with the new CIViC API

#127 susannasiebert closed 1 year ago
0
Bump mistune from 0.8.4 to 2.0.3

#126 dependabot[bot] opened 2 years ago
0
Bump numpy from 1.19.1 to 1.22.0

#125 dependabot[bot] opened 2 years ago
0
Bump notebook from 5.7.10 to 6.4.12

#124 dependabot[bot] opened 2 years ago
0
Convert CIVICPY_CACHE_TIMEOUT_DAYS environment variable to int

#123 dameyerdave closed 2 years ago
1
Bump notebook from 5.7.10 to 6.4.10

#122 dependabot[bot] closed 2 years ago
1
ValueError("Can't use wildcard when searching for non-GRCh37 coordinates") when annotating VCFs with `*` ALT allele

#121 mano2991 closed 2 years ago
5
Bump ipython from 7.17.0 to 7.31.1

#120 dependabot[bot] closed 1 year ago
1
is there any useful examples of how to use it

#119 asmlgkj opened 3 years ago
0
Bump babel from 2.8.0 to 2.9.1

#118 dependabot[bot] opened 3 years ago
0
Bump notebook from 5.7.10 to 6.4.1

#117 dependabot[bot] closed 2 years ago
1
Bump py from 1.9.0 to 1.10.0

#116 dependabot[bot] opened 3 years ago
0
Bump pygments from 2.6.1 to 2.7.4

#115 dependabot[bot] opened 3 years ago
0
Bump pyyaml from 5.3.1 to 5.4

#114 dependabot[bot] opened 3 years ago
0
Bump jinja2 from 2.11.2 to 2.11.3

#113 dependabot[bot] opened 3 years ago
0
Use the pagination ability of the advanced search endpoint when fetching all records

#112 susannasiebert closed 3 years ago
0
Handle `=` in synonymous variant names

#111 susannasiebert closed 3 years ago
2
synonymous CIViC variants with `=` in the name (e.g. `E55= (c.165G>A)`) cause VCF creation to fail

#110 susannasiebert closed 3 years ago
0
Bump bleach from 3.1.5 to 3.3.0

#109 dependabot[bot] opened 3 years ago
0
update civicpy hard cache behavior

#108 ahwagner closed 3 years ago
0
Bump notebook from 5.7.10 to 6.1.5

#107 dependabot[bot] closed 3 years ago
1
accessing civicrecords from local cache

#106 vipints closed 3 years ago
8
Skip cache creation test because it runs a long time and will freeze up CIViC if run in parallel on travis-ci

#105 susannasiebert closed 4 years ago
0
Travis cannot pull test pkl

#104 ahwagner closed 7 months ago
1