issues
search
harvardinformatics
/
snpArcher
Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
MIT License
63
stars
30
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
documenation
#111
cademirch
closed
1 year ago
0
cpus-per-task as required for slurm
#110
erikenbody
closed
2 months ago
3
Add snp density visualization to QC module
#109
tsackton
opened
1 year ago
0
bcftools v1.10
#108
tsackton
closed
1 year ago
0
Incorrect multi-base REF/ALT alleles
#107
tsackton
closed
2 weeks ago
1
bcftools-1.12 loses intervals at the sort_gather_vcfs step
#106
osipovarev
closed
9 months ago
1
fixes for checkpoints in the cloud
#105
cademirch
closed
1 year ago
0
Docs
#104
cademirch
closed
1 year ago
0
Create conf.py
#103
cademirch
closed
1 year ago
0
Error in rule concat_gvcfs
#102
ediamant
closed
3 months ago
4
fix: issue with unsorted chrom sizes in trackhub
#101
cademirch
closed
1 year ago
0
update bugfix branch
#100
cademirch
closed
1 year ago
0
Make Trackhubs better
#99
cademirch
closed
1 year ago
0
Fix ncbi-ref error in write_samples.py
#98
tsackton
closed
1 year ago
0
fix typo
#97
erikenbody
closed
1 year ago
0
write_samples.py producing a Type Error
#96
ediamant
closed
1 year ago
3
Trackhubs
#95
cademirch
closed
1 year ago
0
explicit outputs for postprocessing indexes
#94
erikenbody
closed
1 year ago
0
Merge mk into main
#93
tsackton
closed
1 year ago
0
Update docs and minor code fixes
#92
tsackton
closed
1 year ago
0
java space/memory issue for db2vcf step
#91
subirshakya
closed
3 months ago
2
file.rename() in qc.dashboard.render fails across partitions
#90
tsackton
closed
2 months ago
1
Update qc_dashboard_interactive.Rmd
#89
tsackton
closed
1 year ago
0
Updating helper scripts and README
#88
tsackton
closed
1 year ago
0
sort/gather step fails with high interval count
#87
tsackton
opened
1 year ago
1
Qc map fix
#86
erikenbody
closed
1 year ago
0
Production ready Sentieon
#85
erikenbody
closed
1 year ago
0
Add min_version
#84
tsackton
closed
1 year ago
0
merge main into bugfix
#83
cademirch
closed
1 year ago
0
split envs in qc and r-base to 4.1.3
#82
cademirch
closed
1 year ago
1
fix QC R dependencies
#81
erikenbody
closed
1 year ago
0
address fasterq-dump error code 3.
#80
cademirch
closed
1 year ago
1
get_fastq_pe: fasterq-dump quit with error code 3
#79
erikenbody
closed
1 year ago
4
Bugfix
#78
tsackton
closed
1 year ago
0
merge main into bugfix
#77
cademirch
closed
1 year ago
0
Update qc.yml
#76
erikenbody
closed
1 year ago
0
Update fastq2bam.yml
#75
cademirch
closed
1 year ago
1
Create write_samples.py
#74
cademirch
closed
1 year ago
0
Update qc_dashboard_interactive.Rmd
#73
erikenbody
closed
1 year ago
0
fix duplicate sample issues
#72
tsackton
closed
1 year ago
0
Fix duplicate sample issues
#71
tsackton
closed
1 year ago
0
Benchmark
#70
tsackton
closed
1 year ago
0
Delete sample_sheets directory
#69
cademirch
closed
1 year ago
0
Refactor/merge CCGP work
#68
tsackton
closed
1 year ago
0
Merge refactor
#67
cademirch
closed
1 year ago
0
Rule parameter depends on checkpoint but checkpoint output is not defined as input file for the rule
#66
cademirch
closed
1 year ago
1
update sequence download code
#65
tsackton
closed
1 year ago
0
get-fastq-pe fails on some SRRs even though fasterq dump gets it
#64
cademirch
closed
1 year ago
3
merge main into bugfix
#63
cademirch
closed
1 year ago
0
Consider replacing current download code
#62
tsackton
closed
1 year ago
1
Previous
Next