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hubmapconsortium
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ontology-api
The HuBMAP Ontology Service
MIT License
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UBKG REST API (HM & DD) through AWS API Gateway
#179
yuanzhou
closed
1 year ago
2
ontology-api: update neo4j and API
#178
AlanSimmons
closed
1 year ago
3
Bug fix: HuBMAP ontology dbxrefs to EDAM concepts
#177
AlanSimmons
closed
1 year ago
0
AVR Request Table: Fix Typo on Tutorial page
#176
ChuckKollar
closed
1 year ago
1
EPIC - Ontology: build API endpoints for valuesets used by CEDAR metadata templates
#175
AlanSimmons
closed
1 year ago
9
Rebuild ontology neo4j with latest CSVs
#174
yuanzhou
closed
1 year ago
0
integrate_mondo
#173
AlanSimmons
closed
1 year ago
0
Ontology: upgrade UMLS CSVs to use exports from Neptune for 2022AB
#172
AlanSimmons
closed
1 year ago
1
relations_text_optional
#171
AlanSimmons
closed
1 year ago
0
Ontology: remove SUIs
#170
AlanSimmons
closed
1 year ago
2
Added /status endpoint
#169
ChuckKollar
closed
1 year ago
0
Ontology: add basic QA statements related to ontology ingestion
#168
AlanSimmons
closed
1 year ago
2
Ontology: obtain relationship information for edge IRIs that are not in Relations Ontology
#167
AlanSimmons
closed
1 year ago
2
Ontology/Data Distillery: Migrate repo to dbmi-Pitt github organization
#166
AlanSimmons
closed
1 year ago
4
Ontology: Add Python logging to OWLNETS-UMLS CSV conversion script
#165
AlanSimmons
closed
1 year ago
2
Ontology: Rename OWLNETS-UMLS-GRAPH-12.py to reflect source of truth version of code
#164
AlanSimmons
closed
1 year ago
3
Ontology: when integrating EDAM, force use of EDAM as SAB
#163
AlanSimmons
closed
1 year ago
1
Ontology: integrate Mondo ontology
#162
AlanSimmons
closed
1 year ago
2
Ontology: Remove dependency on OWLNETS_relations.txt
#161
AlanSimmons
closed
1 year ago
3
Ontology: Add GraSS file to neo4j.conf for ontology neo4j browser configuration
#160
AlanSimmons
closed
1 year ago
0
integrated_testing_all_ontologies
#159
AlanSimmons
closed
1 year ago
0
integrated_testing_all_ontologies
#158
AlanSimmons
closed
1 year ago
0
Added explicit version numbers to requirements.txt; updated documentation
#157
AlanSimmons
closed
1 year ago
0
HuBMAP_skowlnet_fixes
#156
AlanSimmons
closed
1 year ago
0
HuBMAP_skowlnet_fixes
#155
AlanSimmons
closed
1 year ago
0
Load latest working version of Ontology onto PROD
#154
shirey
closed
1 year ago
7
Ontology: Add ASCT+B vsn 2.0.1
#153
shirey
closed
1 year ago
1
Ontology: Automate Knowledge Graph Release
#152
AlanSimmons
closed
1 year ago
0
HuBMAP_skowlnet_fixes
#151
AlanSimmons
closed
1 year ago
0
Revisions to skowlnets.py and ontologies.json. Skowlnets script integrated into build_csv.py architecture, including logging and output file locations.
#150
AlanSimmons
closed
1 year ago
1
Updated ontologies.json for HuBMAP application ontology
#149
AlanSimmons
closed
1 year ago
0
Ontology: Orchestration of UMLS CSV exports for ontology neo4j
#148
AlanSimmons
closed
1 year ago
7
Ontology: Test Ontology Neo4j on DEV built using CSVs built using Alan's script
#147
ChuckKollar
closed
1 year ago
5
Spin up an Ontology Neo4j container on DEV using CSVs from a build using Alan's script
#146
ChuckKollar
closed
1 year ago
4
Build new CSV files using Alan's script
#145
ChuckKollar
closed
1 year ago
4
Firedrill part2
#144
ChuckKollar
closed
2 years ago
0
Firedrill
#143
ChuckKollar
closed
2 years ago
0
Firedrill for KidsFirst
#142
ChuckKollar
closed
2 years ago
0
Dev integrate
#141
ChuckKollar
closed
2 years ago
0
concept to concept query fix and cosmetic updates
#140
shirey
closed
2 years ago
0
ontology api open api spec cosmetics
#139
computationdoc
closed
2 years ago
0
Change one character in the cypher for concepts/{id}/concepts to properly limit to "back relations" not "both relations"
#138
computationdoc
closed
2 years ago
0
Import assay categorization into ontology
#137
JAH386
closed
1 year ago
1
Feature: tree based faceted search for anatomy
#136
JAH386
closed
1 year ago
3
Update to CCF 2.0
#135
bherr2
closed
1 year ago
1
use KG to create data for anatomy faceted search tree for portal
#134
computationdoc
opened
2 years ago
2
Secure and release PROD ontology-api
#133
shirey
closed
2 years ago
0
Update ontology-api-spec.yaml
#132
computationdoc
closed
2 years ago
0
Log4J CVE Mitigation for Neo4j
#127
ChuckKollar
closed
2 years ago
0
Log4J CVE Mitigation for Ontology-Neo4j
#126
yuanzhou
closed
2 years ago
1
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