issues
search
itmat
/
Normalization
RNA-Seq normalization and quantification pipeline
https://github.com/itmat/normalization/wiki
GNU General Public License v3.0
10
stars
5
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
how to use
#43
xflicsu
closed
8 years ago
2
About the latest genome and their annotation files.
#42
xflicsu
opened
8 years ago
1
default "-sam" flag for $bam_option, otherwise won't run for .sam aligned files
#41
daweidong
closed
9 years ago
1
can the unaligned read files requirement be waived?
#40
e-manduchi
opened
9 years ago
0
small discrepancy in mapping stats
#39
e-manduchi
opened
9 years ago
0
feature branch mitochondrial chr still present in spreadsheet
#38
e-manduchi
closed
9 years ago
2
high expressers filtered out?
#37
e-manduchi
closed
9 years ago
5
READ_LENGTH
#36
e-manduchi
closed
9 years ago
1
extending sam2cov support
#35
e-manduchi
closed
9 years ago
4
bug in run_normalization.pl
#34
e-manduchi
closed
9 years ago
5
depth for intron and exon quantication
#33
e-manduchi
closed
9 years ago
3
bug in filter_high_expressers_gnorm.pl?
#32
e-manduchi
closed
9 years ago
3
get_percent_numchr.pl
#31
e-manduchi
closed
9 years ago
0
requirements
#30
e-manduchi
opened
9 years ago
0
problem with quantify_genes.pl
#29
e-manduchi
closed
9 years ago
3
small issue in runall_normalization.pl
#28
e-manduchi
closed
10 years ago
1
typo in runall_shuf.pl causing script failures when sge is specified in config
#27
fossilfriend
closed
10 years ago
1
Problems with runall_sam2mappingstats.pl
#26
jenruss
closed
10 years ago
1
small documentation typo
#25
e-manduchi
closed
10 years ago
1
problem with filter_high_expressors.pl
#24
e-manduchi
closed
10 years ago
5
runall_filter.pl has debug printing statement
#23
e-manduchi
closed
10 years ago
3
step 7.C.b
#22
e-manduchi
closed
10 years ago
2
run_sam2cov option request
#21
e-manduchi
opened
10 years ago
1
runall_sam2cov output
#20
e-manduchi
closed
10 years ago
1
runall_sam2mappingstats.pl runs out of memory
#19
loganjeverett
closed
10 years ago
3
small bug in runall_sam2cov.pl
#18
e-manduchi
closed
10 years ago
10
question on section 7 of pipeline
#17
e-manduchi
closed
10 years ago
2
sam2cov - still breaking down
#16
jenruss
closed
10 years ago
6
sam2cov
#15
jenruss
closed
10 years ago
2
annotation script
#14
e-manduchi
closed
10 years ago
3
filename mismatch issue with exonmappers.norm_u_exonquants and quants2spreadsheet.1.pl
#13
fossilfriend
closed
10 years ago
3
suggestion for documention re:runall_head.pl
#12
fossilfriend
closed
10 years ago
3
runall_head.pl needs flag for intergenic and intronic signal
#11
fossilfriend
closed
10 years ago
1
runall_head.pl needs flag for unique/non-unique mappers
#10
fossilfriend
closed
10 years ago
1
*.filtered_nu_exonquants
#9
e-manduchi
closed
9 years ago
1
does sam2mappingstats.pl/getstats.pl handle single-end data?
#8
fossilfriend
closed
10 years ago
2
runall_quantify_exons working for single end data?
#7
e-manduchi
closed
10 years ago
6
filter_sam.pl doesn't deal with single end data
#6
e-manduchi
closed
10 years ago
2
allowing get_total_num_reads.pl to handle gzipped fq files
#5
fossilfriend
closed
10 years ago
1
un-necessary warning in runall_sam2junctions.pl
#4
e-manduchi
opened
10 years ago
0
sam2mappingstats.pl prints to STDERR logs meant for STDOUT
#3
e-manduchi
closed
10 years ago
1
typo in Readme
#2
e-manduchi
closed
10 years ago
4
small bug in filter_sam.pl
#1
e-manduchi
closed
10 years ago
3