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jodyphelan
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TBProfiler
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
GNU General Public License v3.0
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Can I switch to just analyzing the WHO results?
#396
jzhone
opened
1 week ago
0
Re-posting: Difference between results of installed tbprofiler pipeline and online version #389
#395
RehmanZaira
opened
2 weeks ago
0
Documentation for VCF as input
#394
mbhall88
opened
3 weeks ago
3
Delly requiring older libboost
#393
conmeehan
closed
4 weeks ago
4
Fix batch run dir
#392
marvinkobit
opened
1 month ago
0
Fix batch run dir
#391
marvinkobit
closed
1 month ago
0
Run failed_error while loading shared libraries
#390
NabilaIsmail
closed
1 month ago
3
Difference between results of installed tbprofiler pipeline and online version
#389
RehmanZaira
opened
1 month ago
1
Missing position
#388
alantsangmb
opened
1 month ago
0
VCF deviates from the VCF v4.2 specification
#387
mhkc
opened
1 month ago
2
Dealing with structural variants
#386
mdediegofuertes
opened
1 month ago
3
Question about tree utilized to create lineage defining barcodes
#384
mariaelf97
opened
2 months ago
0
bcftools fails to find directory in /sctmp
#383
svannib
opened
2 months ago
1
samtools error in tb-profiler v6.3.0
#382
moks-micro
opened
2 months ago
2
Missing Json format for tb-profiler 6.2.1 collate output
#381
yujun2017
opened
2 months ago
0
update db
#380
jodyphelan
closed
2 months ago
0
TB-PROFILER RUN ISSUE
#379
BhawnaY16
opened
2 months ago
7
Why are genes not associated with drug resistance included in tbdb.bed?
#378
mariaelf97
closed
2 months ago
2
QC metrics
#377
thanadon1437
closed
2 months ago
5
update_tbdb-Unable to update the database
#376
BhawnaY16
closed
3 months ago
2
inconsistency between Resistance report and Resistance variants report
#375
alantsangmb
opened
3 months ago
2
TBProfiler Dealing with 1S6110 insertions
#374
vrennie
opened
3 months ago
5
Clarification on 'qc' variants
#373
vrennie
closed
3 months ago
16
Clarificz
#372
vrennie
closed
3 months ago
0
ERROR MESSAGE
#371
tuelomogashoa
opened
3 months ago
19
Dev
#370
jodyphelan
closed
2 months ago
0
Problem in running the profile pipeline
#369
ngs12321sgn
opened
3 months ago
1
Rifampin resistance rpoB_p.Pro454Ser
#368
bajwamoneeb
opened
4 months ago
7
[E::bcf_hdr_read] Input is not detected as bcf or vcf format
#367
schorlton-bugseq
closed
3 months ago
7
iTOL files not created
#366
moks-micro
closed
2 months ago
10
Cannot perform lineage and spoligotype in v6.2.1
#365
thanadon1437
closed
2 months ago
4
itol collate readme
#364
marvinkobit
closed
3 months ago
1
cannot find in Anacodon
#363
alantsangmb
closed
4 months ago
2
Cannot profile the nanopore file
#362
thanadon1437
closed
4 months ago
6
bump version
#361
jodyphelan
closed
4 months ago
0
Dev
#360
jodyphelan
closed
4 months ago
0
Merge dev
#359
jodyphelan
closed
4 months ago
0
Add stop lost variants to hgvs parsing
#358
jodyphelan
closed
4 months ago
0
Samclip use
#357
jodyphelan
closed
4 months ago
0
Close Samples
#356
jodyphelan
closed
4 months ago
0
version 6.2.0 error in lineage prediction
#355
alantsangmb
closed
4 months ago
4
Temporary files
#354
MarcNiebel
closed
4 months ago
2
Update tbdb with user-specified reference genome doesn’t work
#351
ryanjameskennedy
opened
5 months ago
1
update CI
#350
jodyphelan
closed
5 months ago
0
Dev
#349
jodyphelan
closed
5 months ago
0
update testing
#348
jodyphelan
closed
5 months ago
0
Dev
#347
jodyphelan
closed
5 months ago
0
Prediction issue
#346
RehmanZaira
closed
4 months ago
6
Issue with Pathogen Profiler combine_vcf_variants.py script
#345
taranewman
closed
5 months ago
16
Variant reported at wrong frequency
#344
insapathogenomics
opened
5 months ago
3
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