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jts
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sga
de novo sequence assembler using string graphs
http://genome.cshlp.org/content/22/3/549
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Removal of DistanceEst dependency in example script
#119
0mician
closed
8 years ago
0
Samtools problem in sga-bam2de.pl
#118
Katospiegel
closed
8 years ago
2
cannot configure with bamtools
#117
ArielPaulson
opened
8 years ago
6
Missing scripts in bin directory
#116
jsmedmar
opened
8 years ago
0
v0.10.14 -DistanceEst retuns empty .de file
#115
DHatziioanou
opened
8 years ago
0
configure not working
#114
Sameth
closed
8 years ago
7
Slight confusion in example scripts, and sga-align not getting installed
#113
vuw-ecs-kevin
opened
8 years ago
0
update samtools sort cmd
#112
grh
closed
8 years ago
0
How can I know the final coverage for each contig in the assembly?
#111
rotoli
opened
8 years ago
0
Fix gcc6 issues - made code C++14 friendly
#110
mateidavid
closed
8 years ago
1
Header guard typo in /src/SuffixTools/InverseSuffixArray.h
#109
SHuang-Broad
opened
8 years ago
0
Util/ClusterReader.cpp implicit type conversion an issue with compilers with C++11 as default language standard
#108
SHuang-Broad
opened
8 years ago
7
read and quality length is not the same after EC
#107
starnight0
opened
8 years ago
0
Does not build using gcc 6
#106
tillea
opened
8 years ago
16
Invalid arguments to legend in sga-preqc-report.py
#105
avilella
closed
8 years ago
2
Filter by variant type
#104
ljdursi
closed
8 years ago
3
spelling fixes
#103
mr-c
closed
8 years ago
1
Add a Dockerfile
#102
ljdursi
closed
8 years ago
7
Weird bug with "sga assemble": sga: Bigraph.cpp:190: void Bigraph::merge(Vertex, Edge): Assertion `pTransEdge->getDir() == pEdge->getDir()' failed
#101
ghost
closed
8 years ago
3
Valgrind error with "sga assemble": Conditional jump or move depends on uninitialised value(s)
#100
ghost
closed
8 years ago
1
BUG: fix legend call signature for matplotlib 1.5
#99
jakevdp
closed
8 years ago
0
Issue with sga-preqc-report.py: Invalid arguments to legend
#98
reubwn
closed
8 years ago
8
sga-preqc-report.py corrupted output file.
#97
kumarsaurabh20
closed
8 years ago
2
Failures in sampled suffix array generation due to wrong read length
#96
abysslover
opened
9 years ago
0
Tag a new release
#95
tseemann
closed
9 years ago
1
send to stdout
#94
macmanes
opened
9 years ago
1
Fixes of minor issues that are relevant when correcting with large k-mer sizes and low coverage regions
#93
ktrns
closed
9 years ago
0
Construct a string graph from several fasta sequences
#92
joseale2310
opened
9 years ago
14
Python 3/2 compatibility for sga-preqc-report
#91
luizirber
closed
9 years ago
1
ASQG Format clarification
#90
mariokostelac
closed
9 years ago
2
Do not output -nan in preqc
#89
jts
opened
9 years ago
0
added option to specify random seed
#88
mateidavid
closed
9 years ago
0
Kmer Count along a sequence (kmer-plot)
#87
jgurtowski
closed
9 years ago
4
ktrins:src/Algorithm/ErrorCorrectProcess.cpp: Kmer-correction bugfix. A ...
#86
ktrns
closed
10 years ago
0
Q about "default-variants.fa"
#85
WeijianYe
closed
10 years ago
2
'sga correct -a overlap --metrics' reports number of base changes and not base corrections
#84
ktrns
opened
10 years ago
0
variant calling and de novo assembly using sga
#83
SiyangLiu
closed
8 years ago
3
DistanceEst error
#82
macmanes
closed
8 years ago
2
Consequences of diploid model
#81
karinlag
closed
10 years ago
2
Support Graphical Fragment Assembly (GFA) format
#80
sjackman
closed
8 years ago
8
PreQC aborted
#79
habibr
closed
10 years ago
7
scaffolding with output from other assemblers?
#78
bcthomas
closed
10 years ago
1
./configure Cannot find sparsehash on Mac OS X
#77
noporpoise
closed
10 years ago
14
Use gzip for discarded reads if outfile has ".gz" as extension
#76
mpre
closed
10 years ago
2
Segfault in sga filter
#75
kdm9
closed
10 years ago
3
add kmer-count command
#74
pradosj
closed
10 years ago
2
A small change that make the project compilable with c++11
#73
pradosj
closed
10 years ago
1
Fixed an out of bounds index bug in sga-astat.py.
#72
peterhj
closed
10 years ago
1
Option --kmer-both-strand added to "sga filter"
#71
pradosj
closed
10 years ago
1
sga overlap - "--prefix" option added.
#70
deltadev
closed
10 years ago
1
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