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markziemann
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dee2
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
http://dee2.io
GNU General Public License v3.0
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missing a subset runs from a single SRA project
#52
skinnider
closed
5 years ago
2
When using the R API on windows, the file cannot be found
#51
markziemann
closed
5 years ago
3
Pipeline MEM estimation
#50
markziemann
closed
5 years ago
0
Number of mouse transcripts in annotation
#49
apredeus
opened
5 years ago
4
Error with dee_pipeline.R
#48
markziemann
closed
5 years ago
0
Include a README in each download
#47
markziemann
closed
5 years ago
1
Automatically add MD5 checksums to the bulk data page
#46
markziemann
closed
4 years ago
0
Collapsable markdown for each geneset
#45
markziemann
closed
5 years ago
0
Hall of fame: Published uses of DEE/DEE2 data
#44
markziemann
opened
5 years ago
0
fetching more than 1 query from SRAdbV2 fails
#43
markziemann
closed
5 years ago
1
save disk space by compressing TSVs
#42
markziemann
closed
5 years ago
1
In the R API include a message about where to find information about the QC metrics
#41
markziemann
closed
5 years ago
1
Huge project packages need to be updated with gene info and metadata
#40
markziemann
closed
5 years ago
1
Improving ability to use metadata
#39
markziemann
closed
5 years ago
1
continuous webserver testing
#38
markziemann
closed
5 years ago
2
Create LICENSE
#37
markziemann
closed
5 years ago
0
Some projects have >500 datasets and are not readily accessible via browser
#36
markziemann
closed
5 years ago
4
QC information lacking headers in some files and the matrices look out of whack for A thaliana
#35
markziemann
closed
6 years ago
1
Case insensitive keyword search
#34
markziemann
closed
6 years ago
1
some minor but annoying errors
#33
markziemann
closed
5 years ago
1
Update R function to perform search on available datasets and give meaningful error messages
#32
markziemann
closed
6 years ago
2
Data processing completion timeline
#31
markziemann
closed
4 years ago
1
transfer data off Monash servers
#30
markziemann
closed
6 years ago
5
backend overloaded
#29
markziemann
closed
6 years ago
4
Link to QC information in the search results
#28
markziemann
closed
6 years ago
2
checkboxes are too small for mobile users
#27
markziemann
closed
6 years ago
1
update front page with up to date number of datasets
#26
markziemann
closed
6 years ago
2
Some errors generated
#25
markziemann
closed
6 years ago
2
wget issue on HPC
#24
markziemann
closed
6 years ago
1
Using own fastq files not working
#23
markziemann
closed
6 years ago
5
domain name not IP address
#22
markziemann
closed
6 years ago
1
Errors when running multiple parallel jobs in singularity image
#21
markziemann
closed
6 years ago
3
enable https
#20
markziemann
closed
6 years ago
4
QC data needs to be made available for bulk download
#19
markziemann
closed
6 years ago
1
Singularity image is not working properly
#18
markziemann
closed
6 years ago
2
Docs - show users how to check for disk storage in the walk-through
#17
markziemann
closed
6 years ago
1
Too much output text
#16
markziemann
closed
6 years ago
2
Improve website appearance
#15
markziemann
closed
6 years ago
3
Webserver needs a home page
#14
markziemann
closed
7 years ago
1
Enable accession number and keyword search for datasets
#13
markziemann
closed
6 years ago
4
Stricter data sanitation by the webserver (clean.sh)
#12
markziemann
closed
6 years ago
0
Singularity image
#11
markziemann
closed
6 years ago
4
Include kallisto kmer in QC metrics
#10
markziemann
closed
7 years ago
1
error when specifying SRR accessions
#9
markziemann
closed
7 years ago
1
error when processing own data
#8
markziemann
closed
7 years ago
2
CPU_SPEED not assigned correctly
#7
markziemann
closed
7 years ago
1
Enable end users to process own fastq files
#6
markziemann
closed
7 years ago
1
QualityEncoding: metric is not assigned properly
#5
markziemann
closed
7 years ago
1
Some of the QC metrics don't make sense
#4
markziemann
closed
7 years ago
1
minor bug
#3
markziemann
closed
7 years ago
1
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