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matthiaskoenig
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brendapy
BRENDA parser in python
GNU Lesser General Public License v3.0
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Proposed integration of a new feature
#64
noparis
opened
4 months ago
0
Installation with conda ?
#63
noparis
opened
8 months ago
1
Protein sequences when filtering by EC number
#62
AlejandroSanchezCano
opened
1 year ago
0
Allow users to specify location of downloaded artifacts
#61
jdwinkler-lanzatech
opened
1 year ago
0
Switch to BRENDA JSON format
#60
matthiaskoenig
opened
1 year ago
0
Changes for release v0.5.0
#59
matthiaskoenig
closed
2 years ago
0
Rich logging
#58
matthiaskoenig
closed
2 years ago
0
Update resources (OWL, BRENDA, ...)
#57
matthiaskoenig
closed
2 years ago
1
Updated OWL parsing
#56
matthiaskoenig
closed
2 years ago
0
Replace format with fstrings
#55
matthiaskoenig
closed
2 years ago
0
Replace os.path usage with pathlib
#54
matthiaskoenig
closed
2 years ago
0
Fix failing tests
#53
matthiaskoenig
closed
2 years ago
0
Update dependencies
#52
matthiaskoenig
closed
2 years ago
0
Refactor README.rst
#51
matthiaskoenig
closed
2 years ago
0
Create github secrets for github, pypi and twitter
#50
matthiaskoenig
closed
2 years ago
0
Add logo
#49
matthiaskoenig
closed
2 years ago
0
Fix remaining mypy issues
#48
matthiaskoenig
opened
2 years ago
0
flake8 tests
#47
matthiaskoenig
closed
2 years ago
0
Reformat code base with black
#46
matthiaskoenig
closed
2 years ago
0
Code coverage reports
#45
matthiaskoenig
closed
2 years ago
0
Github actions integration
#44
matthiaskoenig
closed
2 years ago
0
Support python 3.10 and document tested/supported python versions
#43
matthiaskoenig
closed
2 years ago
0
Zenodo json update
#42
matthiaskoenig
closed
2 years ago
0
Rename master to main branch
#41
matthiaskoenig
closed
2 years ago
0
Refactor test folder
#40
matthiaskoenig
closed
2 years ago
0
Resources host is down
#39
lyinch
closed
2 years ago
5
Better handling of -999 values and ranges
#38
matthiaskoenig
opened
4 years ago
8
Problem with ujson when installing via PIP
#37
bilehtin
closed
2 years ago
1
Chebi identifiers of chemical species
#36
DeepaMahm
opened
4 years ago
2
Issue with the common names displayed while parsing taxonomy information
#35
DeepaMahm
opened
4 years ago
0
Download online resources (v0.4.1)
#34
matthiaskoenig
closed
4 years ago
1
Changes for v0.4.0
#33
matthiaskoenig
closed
4 years ago
1
Make new pypi release
#32
matthiaskoenig
closed
4 years ago
3
Resolve Km entries to actual reference
#31
matthiaskoenig
opened
4 years ago
5
redundant information filter
#30
Karrenbelt
closed
4 years ago
4
encoding
#29
Karrenbelt
closed
4 years ago
1
Resolve uniprot/swissprot information when provided
#28
matthiaskoenig
closed
4 years ago
1
Map to additional substance ontologies
#27
matthiaskoenig
closed
4 years ago
1
Create SBML file with information
#26
matthiaskoenig
closed
4 years ago
0
brenda_download.txt - file not downloaded during installation
#25
DeepaMahm
closed
4 years ago
4
Organisms with single token not parsed correctly
#24
matthiaskoenig
closed
4 years ago
1
Changes for brendapy-v0.3.0
#23
matthiaskoenig
closed
4 years ago
0
Fix #21, updated access to all information on proteins
#22
matthiaskoenig
closed
4 years ago
1
Updated field access for simple information browsing
#21
matthiaskoenig
closed
4 years ago
0
bugfixes and updates
#20
matthiaskoenig
closed
4 years ago
1
Parse comments
#19
matthiaskoenig
closed
4 years ago
0
Parse tissue information
#18
matthiaskoenig
closed
4 years ago
0
Complete mapping of substance names
#17
matthiaskoenig
opened
4 years ago
8
Species not parsed correctly for some proteins
#16
matthiaskoenig
closed
4 years ago
0
Move away from git lfs (due to bandwidth limitations)
#15
matthiaskoenig
closed
4 years ago
1
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