issues
search
microbiomedata
/
nmdc-schema
National Microbiome Data Collaborative (NMDC) unified data model
https://microbiomedata.github.io/nmdc-schema/
Creative Commons Zero v1.0 Universal
27
stars
8
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
QuantityValue.slot_usage.has_numeric_value.range: Float -> Double
#1904
turbomam
opened
5 months ago
3
Biosample.slot_usage.gold_biosample_identifiers.range: external_identifier -> uriorcurie
#1903
turbomam
closed
5 months ago
0
Update `connect_napa_mongo.py` to output tsv with deleted record identifiers
#1902
mbthornton-lbl
closed
4 months ago
0
fix inconsistent `slot_usages`
#1901
turbomam
opened
5 months ago
1
remove redundant `slot_usage`s
#1900
turbomam
closed
5 months ago
1
Resolve omics processing has output data object referential integrity exceptions
#1899
mbthornton-lbl
closed
5 months ago
0
`slot_usage` parent issue
#1898
turbomam
opened
5 months ago
2
Resolve referential integrity exceptions for `nmdc:sty-11-547rwq94` Metagenome Omics Processing records
#1897
mbthornton-lbl
closed
2 months ago
3
update code to delete unconnected workflow activity and data objects to same logging format as Michael's deletion function
#1896
aclum
closed
3 months ago
1
Update instrument model and vendor enumerations
#1895
brynnz22
closed
5 months ago
0
Resolve omics_processing has_output data_object referential integrity exceptions in study nmdc:sty-11-dcqce727
#1894
mbthornton-lbl
closed
5 months ago
3
`linkml-sqldb dump` crashes in `berkeley-schema-fy24` because of multiple possible `Study.part_of` paths
#1893
turbomam
opened
5 months ago
0
`Study.slot_usage.protocol_link` should not assert `multivalued: true`
#1892
turbomam
opened
5 months ago
2
update UML class diagram relationship arrow types
#1891
sujaypatil96
closed
5 months ago
0
Automate `data_qc` scripts
#1890
mbthornton-lbl
closed
3 months ago
1
ensure that the origin of all `assets/` files can be determined by Makefile or Python code in the repo or high-quality comments
#1889
turbomam
opened
5 months ago
0
ensure that each src/schema YAML file can be re-generated in isoloation
#1887
turbomam
opened
5 months ago
1
1885 determine schema imports graph
#1886
turbomam
closed
5 months ago
0
determine schema imports graph
#1885
turbomam
closed
5 months ago
1
MobilePhaseComponents instead of Solutions
#1884
turbomam
closed
5 months ago
0
1865 Extract Re-IDed Napa DB to YAML, Validate and check referential integrity
#1883
mbthornton-lbl
closed
5 months ago
1
simplify usage of Solution by DissolvingProcess in berkeley-schema-fy24
#1882
turbomam
closed
5 months ago
0
DataPortal can be searched for `Pathway`s and `OntologyGroup`s... does that justify leaving them in nmdc-schema?
#1881
turbomam
closed
3 weeks ago
9
Automate MongoDB Referential Integrity Queries
#1880
mbthornton-lbl
opened
5 months ago
0
remove `ecosystem_diagram.md` from berkeley-schema-fy24
#1879
turbomam
closed
3 months ago
3
merge diagram creation project.Makefile targets into berkeley-schema-fy24
#1878
turbomam
closed
5 months ago
0
analyse build log from berkeley-schema-fy24
#1877
turbomam
closed
5 months ago
2
Assess the usefulness of nmdc-schema (not MIxS) subsets
#1876
turbomam
opened
5 months ago
3
Find elements whose names contain white-space
#1875
turbomam
opened
5 months ago
2
Review types that aren't used in any slot
#1874
turbomam
opened
5 months ago
1
Review enums that aren't used by any slot
#1873
turbomam
opened
5 months ago
1
Guidance required wrt use of `name` and `has_raw_value` on `PersonValue`
#1872
turbomam
opened
5 months ago
0
Review slots that aren't used in any classes
#1871
turbomam
opened
5 months ago
5
Why don't the `src/script`s in nmdc-scehma appear in the berkeley-schema-fy24 repo?
#1870
turbomam
closed
5 months ago
1
Remove extra logic to handle legacy identifiers
#1869
aclum
closed
2 months ago
13
update example data to napa -style identifiers
#1868
aclum
opened
5 months ago
7
initial style guide with chemistry emphasis
#1867
turbomam
opened
5 months ago
0
1855 add instrument enums
#1866
brynnz22
closed
5 months ago
0
Extract Re-IDed Napa DB to YAML, Validate and check referential integrity
#1865
mbthornton-lbl
closed
5 months ago
23
Trust `ChemicalEntity` as the home `domain` for `inchi` etc.
#1864
turbomam
closed
5 months ago
1
Add query to delete non-conforming bioscales data objects
#1863
mbthornton-lbl
closed
5 months ago
0
Create chemical_entity_set Database slot etc
#1862
turbomam
closed
5 months ago
0
create `chemical_entity_set`
#1861
turbomam
closed
5 months ago
0
minimize modelling that uses inchi slot/annotation
#1860
turbomam
closed
5 months ago
2
Delete bioscales legacy data objects
#1859
aclum
closed
5 months ago
3
Add "bulk chemistry" to AnalysisTypeEnum
#1858
bmeluch
closed
5 months ago
2
biosample_term_reconciliation.yaml
#1857
turbomam
opened
5 months ago
0
document the term name differences between the current MIxS slots in nmdc-shema and the current NCBI Biosample attributes
#1856
turbomam
opened
5 months ago
0
add 'novaseq' and 'hiseq' to the InstrumentModelEnum
#1855
brynnz22
closed
5 months ago
1
Update docs to not imply the MkDocs dev-server will start automatically
#1854
eecavanna
closed
5 months ago
0
Previous
Next