issues
search
monarch-initiative
/
monarch-ingest
Data ingest application for Monarch Initiative knowledge graph using Koza
https://monarchinitiative.org
14
stars
1
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
KG-Hub not showing new builds
#500
justaddcoffee
closed
6 months ago
9
Additional text tokenized association fields
#499
kevinschaper
closed
1 year ago
0
Clean up evidence/qualifiers for alliance expression
#498
kevinschaper
closed
1 year ago
0
Update alliance gene expression to capture assay as qualifier, xref as publication
#497
kevinschaper
closed
1 year ago
0
Update download.yaml
#496
glass-ships
closed
1 year ago
0
Update StringDB mapping url
#495
kevinschaper
closed
1 year ago
0
Add documentation badge README.md
#494
glass-ships
closed
1 year ago
0
Add the Mouse Missense Mutation Library (MML) https://jcsmr.anu.edu.au/services/libraries-banking/missense-mutation-library
#493
sierra-moxon
opened
1 year ago
4
update docs to more easily link from provided_by
#492
glass-ships
closed
1 year ago
0
Documentation: Phenio
#491
glass-ships
closed
1 year ago
1
Aspergillus genes are missing from the ncbi gene ingest output
#490
kevinschaper
closed
1 year ago
0
Add edge taxon labels
#489
kevinschaper
closed
1 year ago
1
Update closurizer & monarch_py
#488
kevinschaper
closed
1 year ago
0
Evidence based Quality Control for the Monarch Graph
#487
RichardBruskiewich
opened
1 year ago
1
Uses 2.0 closurizer and gets monarch-py from a branch to bring in the evidence_count field
#486
kevinschaper
closed
1 year ago
0
Add subject/object taxon fields to denormalized edges
#485
kevinschaper
opened
1 year ago
0
Update CTD to use affects
#484
kevinschaper
closed
1 year ago
1
Use weaker predicate for CTD
#483
kevinschaper
closed
1 year ago
1
Include taxon & qualifier labels
#481
kevinschaper
closed
1 year ago
0
Fix docs not building
#480
glass-ships
closed
1 year ago
0
Update cli_utils.py
#479
glass-ships
closed
1 year ago
0
Put merged_graph_stats.yaml into `current/stats` on kg-hub s3 bucket
#478
kevinschaper
closed
1 year ago
1
Filter out phenio nodes with no name
#477
kevinschaper
closed
1 year ago
1
Normalize usage of gene name and symbol
#476
kevinschaper
closed
1 year ago
1
Treat name as a required field
#475
kevinschaper
opened
1 year ago
0
Update to monarch-py 0.9.1 for single valued category in denormalized schema
#474
kevinschaper
closed
1 year ago
0
Koza SSSOM rewire feature: document loss of precision
#473
matentzn
opened
1 year ago
0
Make category single valued in denormalized schema
#472
kevinschaper
closed
1 year ago
2
Populate in_taxon_label on genes
#471
kevinschaper
closed
1 year ago
1
Docs deploy action is failing
#470
kevinschaper
closed
1 year ago
1
Fixing broken link
#469
cmungall
closed
1 year ago
0
Review kg-phenio ID prefix subset
#468
kevinschaper
opened
1 year ago
8
Add taxon labels to genes
#467
kevinschaper
closed
1 year ago
1
Produce jsonl version of graph with category closure populated and load into neo4j artifact
#466
kevinschaper
closed
1 year ago
0
Update biolink model to 3.4
#465
kevinschaper
closed
1 year ago
0
Update Biolink Model to 3.3.4
#464
kevinschaper
closed
1 year ago
0
Add full category closure to category field in jsonl and neo4j artifacts
#463
kevinschaper
closed
1 year ago
0
Add jsonl and nt versions of the final graph
#462
kevinschaper
closed
1 year ago
1
add kgx transforms to get jsonl and nt output of the full graph
#461
kevinschaper
closed
1 year ago
0
Filter phenio for biolink validity, fix hpo g2d IDs
#460
kevinschaper
closed
1 year ago
0
Address Publication ingests
#459
glass-ships
opened
1 year ago
0
Make sure phenio edges have a valid category
#458
kevinschaper
opened
1 year ago
0
Drug Central Ingest
#457
putmantime
opened
1 year ago
4
(Substantial?) resolution of dangling Panther edges.
#456
RichardBruskiewich
closed
1 year ago
1
Updated kgx to release 2.0.7 to pull in BMT 1.0.13
#455
RichardBruskiewich
closed
1 year ago
0
Make sure subject is always in subject_closure, object is always in object_closure
#454
kevinschaper
opened
1 year ago
0
Remove OMIM from download.yaml (now coming from hpoa g2d)
#453
kevinschaper
closed
1 year ago
0
Add mesh to chebi biomappings
#452
kevinschaper
closed
1 year ago
0
hpoa g2d fix
#451
kevinschaper
closed
1 year ago
0
GenCC gene to disease ingest
#450
kevinschaper
closed
5 months ago
3
Previous
Next