mskcc smile-server issues

mskcc / smile-server

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Start looking at ddog logs / putting together a monitor for tracing cohort sample updates

#1220 ao508 opened 5 hours ago
1
Revisit grouping TEMPO columns in Samples view

#1219 ao508 opened 6 hours ago
0
Extend TEMPO columns to include Gene Panel, Bait Set

#1218 ao508 opened 6 hours ago
1
Document the extended types in smile-dashboard (related to flattening structures)

#1217 ao508 opened 7 hours ago
0
Recover missing Cohort Samples w/Anne Marie

#1216 ao508 opened 7 hours ago
1
Updates to samples in 05500_BO and 05500_CT

#1215 ao508 opened 18 hours ago
1
Make new db dump from production and import to dev

#1214 ao508 closed 6 hours ago
0
JULY 2024: Disaster Recovery Test

#1213 ao508 opened 2 days ago
0
Allow Cohort sample list updates

#1212 ao508 closed 1 day ago
0
Flatten data structures used for dashboard views

#1211 ao508 opened 1 week ago
1
Update buttons in samples table

#1210 ao508 opened 1 week ago
1
Add new pub-sub topic for dbGap updates

#1209 ao508 opened 1 week ago
0
Add message handler in SMILE server for incoming dbGap sample updates.

#1208 ao508 opened 1 week ago
0
Make dbGap info editable on SMILE dashboard (and push update to SMILE)

#1207 ao508 opened 1 week ago
0
Backfill existing dbGap sample data.

#1206 ao508 opened 1 week ago
0
[dashboard] Export data from dbGap view into phenotype file format

#1205 ao508 opened 1 week ago
0
Add some sort of table or field in the Cohort dashboard view that shows which samples could not be linked to the Cohort.

#1204 ao508 opened 1 week ago
0
Add some sort of import report for Cohorts that details what samples could not get linked to Cohort due to being unknown to SMILE.

#1203 ao508 opened 1 week ago
0
Adjust Cohort import workflow to allow new samples to get linked to it.

#1202 ao508 closed 6 hours ago
1
Duplicate Tempo nodes on Samples

#1201 ao508 closed 6 days ago
0
Flexible NATS message reader/parser

#1200 ao508 closed 1 week ago
0
DB exception for some TEMPO event imports

#1199 ao508 closed 6 days ago
0
Display dbGap study in sample view and add dbGap tab

#1198 ao508 opened 1 week ago
0
[smile-server] Update db schema with dbGaP node/relationship

#1197 ao508 opened 1 week ago
0
[dashboard] Auto-sort data by latest updates/imports

#1196 ao508 opened 1 week ago
1
Mock up tabulated/paginated view experience for the SMILE dashboard

#1195 ao508 closed 6 days ago
1
Break down dbGaP tasks into smaller contained efforts

#1194 ao508 closed 6 days ago
0
Exporting data from patient view (samples table) does not use the filename format expected.

#1193 ao508 opened 2 weeks ago
0
TEMPO message handler patch

#1192 ao508 closed 2 weeks ago
0
Allow flexible input sample ids for the TEMPO pipeline

#1191 ao508 closed 2 weeks ago
0
Allow TEMPO to publish samples to SMILE with outdated CMO labels

#1190 ao508 closed 1 week ago
1
Import sample updates for 05500_CT_58 and 05500_BO_30

#1189 qu8n closed 2 weeks ago
1
dbGaP Submission Tracking in SMILE

#1188 ao508 opened 3 weeks ago
0
Using SMILE to assemble phenotype files needed for dbGaP submission

#1187 ao508 opened 3 weeks ago
0
Using SMILE to assemble phenotype files needed for dbGaP submission

#1186 ao508 closed 1 week ago
0
dbGaP submission tracking in SMILE

#1185 ao508 opened 3 weeks ago
0
Discuss whether the Samples page should be for viewing data only (and not update)

#1184 qu8n closed 3 weeks ago
0
Investigate configuring podman to using a certain designated uid when starting up containers

#1183 ao508 opened 3 weeks ago
0
parameterize datadog arguments in smile-deployment/docker-compose file

#1182 ao508 closed 2 weeks ago
1
Flatten pmUsers and endUsers on CohortComplete nodes

#1181 ao508 closed 3 weeks ago
0
Recover IGO requests delivered since June 5 once podman services are back up.

#1180 ao508 closed 3 weeks ago
0
Sample table: paginated/tab view of everything / TEMPO / dbGAP

#1179 ao508 closed 6 days ago
1
Can SMILE samples be searched by outdated CMO sample names? - CONFIRMED YES

#1178 ao508 closed 3 weeks ago
1
Investigate why Cohorts aren't appearing in SMILE after being published by TEMPO

#1177 ao508 closed 2 weeks ago
1
Bug fix for exporting data when MRN searching

#1176 ao508 closed 1 week ago
1
Display TEMPO data for samples on general Samples table (stopgap for #1179)

#1175 ao508 closed 2 weeks ago
1
Dev infrastructure overhaul

#1174 ao508 opened 4 weeks ago
0
[smile-server] Flatten pmUsers and endUsers for CohortComplete db model

#1173 ao508 closed 3 weeks ago
1
Label Generator -> SMILE Server codebase

#1172 ao508 opened 1 month ago
0
Set `billed` to `false` for new Tempo nodes

#1171 qu8n closed 1 month ago
1