mskcc smile-server issues

mskcc / smile-server

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Set up call with Avery to discuss Tempo-cBioPortal SMILE workflow/pipeline

#1337 ao508 opened 2 days ago
0
Added request-reply for fetching samples by CMO label

#1336 ao508 opened 2 days ago
0
Recover DMP samples that are missing from SMILE

#1335 ao508 opened 3 days ago
0
[smile-config] Add request-reply topic and permissions for handling query for samples by cmo sample label

#1334 ao508 opened 3 days ago
1
[smile-server] Check if a sample already exists with a certain CMO label before assigning label

#1333 ao508 opened 3 days ago
1
Revert labels for approved samples after label generator check in place

#1332 ao508 opened 3 days ago
1
PMs/Voyager - reviewing cases flagged as "REQUIRES_FURTHER_REVIEW"

#1331 ao508 opened 3 days ago
0
Sinisa - samples in voyager with dup labels. Look into why they're missing from SMILE

#1330 ao508 opened 3 days ago
0
Compile ACCESS IGO sample CMO labels (legacy and current in SMILE)

#1329 ao508 opened 4 days ago
1
Catch ParseException when resolving collection year from dmp seq date

#1328 ao508 closed 5 days ago
0
Allow DMP samples to import without a resolved CMO. patient ID

#1327 ao508 opened 5 days ago
0
Migration to Java21 and Neo4j 5.19.0 (#1313)

#1326 ao508 closed 1 week ago
0
Look into SMILE CRDB crosswalk table mappings

#1325 ao508 opened 1 week ago
0
SMILE clinical importer - relax certain restrictions preventing samples from getting imported

#1324 ao508 closed 3 days ago
1
Pav: dmp missing ?

#1323 ao508 closed 3 days ago
0
Draft up summary of work done re: ID label reconciliation

#1322 ao508 closed 3 days ago
1
[dashboard] Make the Patients page's default sort to be by importDate

#1321 qu8n closed 3 days ago
2
Fix end date formatter

#1320 ao508 closed 1 week ago
0
Fix for correcting CMO patient IDs

#1319 ao508 closed 1 week ago
0
[dashboard] Rebase the dashboard repo to support the new Neo4j version

#1318 qu8n closed 1 week ago
0
Update docker file for java21

#1317 ao508 closed 2 weeks ago
0
Java21

#1316 ao508 closed 1 week ago
0
[request filter] Publish sample updates even when sample fails sanity check

#1315 ao508 closed 3 days ago
1
[request filter] Fix bug that rejects sample updates when sample validation fails

#1314 qu8n closed 1 week ago
0
Java21

#1313 ao508 closed 2 weeks ago
0
major cleanup - neo4j db version and java version. upgrade

#1312 ao508 closed 1 week ago
0
[dashboard] Display historical sample metadata

#1311 ao508 opened 2 weeks ago
2
Update the certs of SMILE dashboard (expired on Nov 6)

#1310 qu8n closed 1 week ago
1
[neo4j/java update] Address any remaining deprecation warnings in SMILE server codebase

#1309 ao508 opened 2 weeks ago
0
[neo4j/java update] Confirm all web service endpoints work

#1308 ao508 closed 1 week ago
1
[neo4j/java update] Upgrade database on SMILE PROD

#1307 ao508 closed 2 days ago
1
[neo4j/java update] Test end-to-end workflow in SMILE DEV

#1306 ao508 closed 1 week ago
2
[neo4j/java update] Make new db dump from production database

#1305 ao508 closed 3 days ago
1
Update SampleMetadatas for request 16478

#1304 qu8n closed 2 weeks ago
0
DMP/CVR fetcher not publishing all clinical samples to SMILE?

#1303 ao508 closed 2 days ago
1
Investigate duplicate TEMPO samples from IGO

#1302 qu8n closed 2 weeks ago
0
Look into a missing request and some missing samples

#1301 qu8n closed 2 weeks ago
0
Look into why these DMP samples aren't in SMILE

#1300 ao508 closed 2 weeks ago
0
Migrate Requests page to use a direct Neo4j query instead of OGM

#1299 qu8n closed 3 days ago
2
Migrate Cohorts page to use a direct Neo4j query instead of OGM

#1298 qu8n opened 1 month ago
2
Lunch and Learn slides

#1297 ao508 closed 2 weeks ago
0
[label generator] Confirm (or fix) nucleic acid counter is derived on a per-sample basis, not per-PATIENT

#1296 ao508 opened 1 month ago
0
Investigate slow-loading Patients page

#1295 qu8n closed 2 weeks ago
1
Microbiome - review schema, provide feedback, and schedule follow up meeting

#1294 ao508 closed 3 weeks ago
0
[label generator] Check if a sample already exists with a certain CMO label before assigning label

#1293 ao508 opened 1 month ago
1
Migrate Patients page to use a direct Neo4j query instead of OGM

#1292 qu8n closed 1 week ago
0
Introduce pagination/infinite scrolling for the Samples page

#1291 qu8n closed 3 weeks ago
2
Regenerate CMO Sample ID for sample 12356_AI_31

#1290 qu8n closed 1 month ago
1
Revert additional CMO legacy labels shared by Anne Marie that weren't caught in the first round of fixes

#1289 ao508 closed 3 days ago
1
Tim Song - data updates (14461_U, + )

#1288 ao508 closed 1 month ago
0