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smile-server
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Explore use case displaying 500+ rows of Samples data
#1239
qu8n
closed
1 month ago
1
"View TEMPO" columns button > to show WES samples
#1238
ao508
closed
4 weeks ago
1
Generate report button only downloads 500 samples (should download all/anything matching filter criteria)
#1237
ao508
closed
3 weeks ago
1
Datadog monitors for smile-server
#1236
ao508
closed
2 months ago
1
Datadog monitors for label generator
#1235
ao508
closed
2 months ago
1
Backfill Oncotree codes for samples in SMILE
#1234
ao508
closed
3 weeks ago
0
Populate cancer type/cancer type detailed on import of research and clin samples in SMILE
#1233
ao508
closed
2 months ago
3
Extend TEMPO fields to include oncotree code, cancer type, cancer type detailed
#1232
ao508
closed
1 month ago
1
Recover IGO requests: 16067_C,16070_B,16092_B,15166_D,16067_B,16093_B,10342_D,12405_I,11674_K,13843_F
#1231
ao508
closed
2 months ago
0
Additional updates for 005500_BO and 05500_CT
#1230
ao508
closed
2 months ago
0
Enable filtering by date range for the Import Date column on Requests page
#1229
qu8n
opened
2 months ago
1
DMP model update - support 'ct' json property
#1228
ao508
closed
2 months ago
0
Backfill missing DMP samples into SMILE
#1227
ao508
closed
1 month ago
1
DMP model update - add or ignore "ct" field in sample metadata
#1226
ao508
closed
2 months ago
0
[dashboard] Auto sort samples by import date on initial page load
#1225
qu8n
closed
3 weeks ago
1
Speed up the initial loading time of Samples page & enable searching
#1224
ao508
closed
16 hours ago
1
NPE in label generator
#1223
ao508
closed
2 months ago
0
Fix filename bug(s) on certain dashboard tables
#1222
ao508
closed
2 months ago
1
Discuss how to prioritize auto sorting the Samples page on initial page load and implementation strategies
#1221
qu8n
closed
1 month ago
0
Start looking at ddog logs / putting together a monitor for tracing cohort sample updates
#1220
ao508
closed
2 months ago
2
Revisit grouping TEMPO columns in Samples view
#1219
ao508
closed
1 month ago
0
Extend TEMPO columns to include Gene Panel, Bait Set
#1218
ao508
closed
2 months ago
1
Document the extended types in smile-dashboard (related to flattening structures)
#1217
ao508
closed
1 month ago
0
Recover missing Cohort Samples w/Anne Marie
#1216
ao508
closed
2 months ago
1
Updates to samples in 05500_BO and 05500_CT
#1215
ao508
closed
2 months ago
1
Make new db dump from production and import to dev
#1214
ao508
closed
3 months ago
0
JULY 2024: Disaster Recovery Test
#1213
ao508
opened
3 months ago
0
Allow Cohort sample list updates
#1212
ao508
closed
3 months ago
0
Flatten data structures used for dashboard views
#1211
ao508
closed
2 months ago
1
Update buttons in samples table
#1210
ao508
closed
2 months ago
1
Add new pub-sub topic for dbGap updates
#1209
ao508
opened
3 months ago
1
Add message handler in SMILE server for incoming dbGap sample updates.
#1208
ao508
opened
3 months ago
0
Make dbGap info editable on SMILE dashboard (and push update to SMILE)
#1207
ao508
opened
3 months ago
0
Backfill existing dbGap sample data.
#1206
ao508
opened
3 months ago
0
[dashboard] Export data from dbGap view into phenotype file format
#1205
ao508
opened
3 months ago
0
Add some sort of table or field in the Cohort dashboard view that shows which samples could not be linked to the Cohort.
#1204
ao508
closed
2 months ago
0
Add some sort of import report for Cohorts that details what samples could not get linked to Cohort due to being unknown to SMILE.
#1203
ao508
closed
2 months ago
0
Adjust Cohort import workflow to allow new samples to get linked to it.
#1202
ao508
closed
3 months ago
1
Duplicate Tempo nodes on Samples
#1201
ao508
closed
3 months ago
0
Flexible NATS message reader/parser
#1200
ao508
closed
3 months ago
0
DB exception for some TEMPO event imports
#1199
ao508
closed
3 months ago
0
Display dbGap study in sample view and add dbGap tab
#1198
ao508
opened
3 months ago
0
[smile-server] Update db schema with dbGaP node/relationship
#1197
ao508
opened
3 months ago
0
[dashboard] Auto-sort data by latest updates/imports for Requests and Cohorts views
#1196
ao508
closed
2 months ago
3
Mock up tabulated/paginated view experience for the SMILE dashboard
#1195
ao508
closed
3 months ago
1
Break down dbGaP tasks into smaller contained efforts
#1194
ao508
closed
3 months ago
0
Exporting data from patient view (samples table) does not use the filename format expected.
#1193
ao508
closed
2 months ago
0
TEMPO message handler patch
#1192
ao508
closed
3 months ago
0
Allow flexible input sample ids for the TEMPO pipeline
#1191
ao508
closed
3 months ago
0
Allow TEMPO to publish samples to SMILE with outdated CMO labels
#1190
ao508
closed
3 months ago
1
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