nf-osi nfportalutils issues

nf-osi / nfportalutils

Utilities for NF Portal project and data management

https://nf-osi.github.io/nfportalutils/

MIT License

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issues

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Downclimb in develop

#180 anngvu closed 5 days ago
0
surface addAnnotationColumns in new_dataset

#179 allaway opened 3 weeks ago
0
nf-core output: add annotations for featureCounts files

#178 allaway opened 2 months ago
0
Additional instructions with best known working package combinations and installation for Windows

#177 anngvu closed 3 months ago
0
Add PR doc previews to CI

#176 anngvu closed 4 months ago
0
Phase C of synapse refactor

#175 anngvu opened 4 months ago
0
Phase B of synapser refactor

#174 anngvu opened 4 months ago
0
Phase A for synapser factor

#173 anngvu opened 4 months ago
0
Vignette just focused on functionality related to portal tables

#172 anngvu closed 4 months ago
0
synapser refactor phase a

#171 anngvu closed 1 week ago
6
Add synapser update ci

#170 anngvu closed 5 months ago
0
Patch/deps workflow

#169 anngvu closed 5 months ago
0
change people functions to synapser

#168 allaway closed 5 months ago
4
Update formatting of PMID

#167 anngvu closed 5 months ago
0
Publication pubmed now has PMID: in front

#166 cconrad8 closed 5 months ago
0
Update package to run with updated version of `reticulate`

#165 jaybee84 opened 7 months ago
0
modify_annotations appears to no longer work.

#164 allaway closed 5 months ago
1
Summarize attributes as annotations

#163 anngvu closed 7 months ago
13
Revalidation workflow

#162 anngvu closed 6 months ago
0
Correctly handle multiple admin users

#161 anngvu opened 7 months ago
0
Patch/cbp and exports

#160 anngvu closed 5 months ago
0
Add valid values for `data_type` in manifest_generate() function

#159 jaybee84 opened 7 months ago
0
Pin reticulate version

#158 anngvu closed 7 months ago
0
Increase safety of grant_specific_file_access

#157 allaway closed 5 months ago
1
Patch/schematic api

#156 anngvu closed 8 months ago
0
Project/template enhancements

#155 anngvu opened 8 months ago
0
Update Dockerfile

#154 anngvu closed 8 months ago
0
Update Dockerfile

#153 anngvu closed 8 months ago
0
expose manifest_passed function

#152 allaway closed 6 months ago
0
Update cBP add_ funs

#151 anngvu closed 9 months ago
0
Minor update for including gene expression based on cBP feedback

#150 anngvu closed 9 months ago
0
Create "Tools" or "Other Resources" folder based on new project template specs

#149 anngvu opened 9 months ago
2
Feat/closeout support utils

#148 anngvu closed 9 months ago
0
Add vignette for schematic API usage via package

#147 anngvu closed 6 months ago
0
Add helper and diagram template for comparing DSP vs. project datasets

#146 anngvu closed 9 months ago
0
Format result of `meta_qc_project` within overall markdown report

#145 anngvu closed 9 months ago
0
Patch/study backend updates

#144 anngvu closed 9 months ago
0
Test and update `assign_study_data_types` with new view

#143 anngvu closed 7 months ago
0
Update calculate_related_studies util to store annotations

#142 anngvu closed 9 months ago
0
QoL: change this to reuse functions from datasets.R

#141 allaway closed 9 months ago
0
Update `register_study`

#140 anngvu closed 9 months ago
0
Update annotations.R

#139 jaybee84 closed 5 months ago
0
Update annotate-nf-processed-data.Rmd

#138 jaybee84 closed 9 months ago
1
Could add OR logic for fastq.gz

#137 allaway opened 9 months ago
0
metadata is a resourceType

#136 allaway opened 9 months ago
0
fq.gz is not always geneExpression

#135 allaway opened 9 months ago
1
Feat/view fix

#134 anngvu closed 9 months ago
2
Update the cBioPortal vignette

#133 anngvu closed 6 months ago
0
Util to help with fixing schema issues for broken views

#132 anngvu closed 9 months ago
0
Precheck for supplemental context/coverage for schematic revalidation

#131 anngvu closed 6 months ago
0