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nservant
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HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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Searching for the wrong suffix *.fastq.fastq
#550
yeroslaviz
opened
2 years ago
3
explanation of statistics
#549
Phlya
opened
2 years ago
0
how to generate UCSC hic?
#548
gaofan83
closed
2 years ago
1
Chromatin order is wrong in the HiC-Pro output
#547
xyljoslin
opened
2 years ago
1
fastq adapter trimming
#546
yinshiyi
opened
2 years ago
0
Perform hichip and found that high trimmed map rate to 50%
#545
chase2biye
opened
2 years ago
3
How to create a valid bam file without duplication ?
#544
yshcai
opened
2 years ago
0
n
#543
BenxiaHu
opened
2 years ago
0
/tmp/hicmk.4655:68: *** missing separator. Stop.
#542
L1angyan
closed
2 years ago
1
Error with iced normalization
#541
hillbluff
closed
2 years ago
1
Error after quality checks make: *** [/usr/local/bin/HiC-Pro_2.11.4/bin/../scripts//Makefile:181: hic_qc] Error 1
#540
raquelsofi
closed
2 years ago
1
Error at the start of HiC-Pro: failed to create symbolic link
#539
kaivalya-lgr
opened
2 years ago
0
Bowtie2 "directory" error?
#538
jaclyn-marie
closed
2 years ago
0
selecte restriction enzyme
#537
naturalstay
opened
2 years ago
0
Revert "improvement: replaces run with entrypoint"
#536
nservant
closed
2 years ago
0
Bugfix
#535
nservant
closed
2 years ago
0
Too many pairs_with_singleton
#534
fafuyyk
opened
2 years ago
0
Merge interactions fails in FithHiCHIP
#533
pna059
opened
2 years ago
1
HiC-Pro error in docker
#532
voluptatis
opened
2 years ago
1
ask for help
#531
fafuyyk
closed
2 years ago
0
why occurr "[main_samview] fail to read the header from "-"."?
#530
Threeleben
opened
2 years ago
2
n
#529
BenxiaHu
opened
2 years ago
2
multiple enzymes ligation product
#528
yinshiyi
opened
2 years ago
2
merge allValidPairs files
#527
AlexHuang0420
opened
2 years ago
7
m
#526
BenxiaHu
opened
2 years ago
0
Cannot generate contact maps
#525
ghar1821
closed
2 years ago
3
Cannot run ICE normalization on the test dataset with Singularity image
#524
pierrepo
closed
2 years ago
2
ICE normalization error with FitHiChIP
#523
pna059
closed
2 years ago
0
README.md has missing requirement information of python package.
#522
darkcircle
opened
2 years ago
0
n
#521
BenxiaHu
opened
2 years ago
5
m
#520
BenxiaHu
opened
2 years ago
2
merging replicates?
#519
pna059
opened
2 years ago
0
ligation motif possible combos
#518
sabrsyed
opened
2 years ago
0
Restarting after BAM pairing
#517
pna059
closed
2 years ago
1
hic_results can not found
#516
ZhaoRanze
opened
2 years ago
0
Trouble installing Hic-Pro v3.1.0
#515
Ruchi-281
opened
2 years ago
2
convert allvalidpairs file into bedpe format
#514
koushik20
closed
2 years ago
0
High Filtered_pairs rate
#513
zhanglp996
opened
2 years ago
2
n
#512
BenxiaHu
opened
2 years ago
0
n
#511
BenxiaHu
opened
2 years ago
1
Generate gzipped fastq file for split_reads.py
#510
qiyubio
closed
2 years ago
0
Error - Installation - config system not detected. Please (re) install HiC-Pro !
#509
wujennif1998
opened
2 years ago
8
hicpro3.1.0 step1 Terminated and can not go on
#508
ZhaoRanze
opened
2 years ago
1
dead link in the manual to RESULTS.md
#507
yeroslaviz
closed
2 years ago
0
dead link in manul.md
#506
yeroslaviz
closed
2 years ago
0
m
#505
BenxiaHu
opened
2 years ago
2
error when running the hic_qc scripts
#504
yeroslaviz
closed
2 years ago
3
combine error
#503
seasky002002
opened
2 years ago
2
Raw QC tables from IMR90 replicate 1 sample from Dixon et al (2012)
#502
Rseq
opened
2 years ago
2
hicpro2juicer.sh out of memory 87980 Segmentation fault
#501
wulisling
closed
2 years ago
2
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