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nservant
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HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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Some problem about hicpro2juicebox.sh
#586
ydy1127
closed
10 months ago
0
make install error
#585
Alim430
closed
11 months ago
0
Warning : Matrix not found at XXX resolution
#584
moxqiang
opened
12 months ago
1
make install error
#583
hosseinsalari65
opened
12 months ago
0
Assign alignments to restriction fragments
#582
LHXqwq
closed
5 months ago
1
download issue for singularity image of HiC-Pro
#581
XuewenWangUGA
opened
1 year ago
4
Question about manually sorting the '.validPairs'.
#580
Miracle-Yao
closed
2 months ago
1
There are typo "LIGATTION_SITE" in bowtie_combine.sh script
#579
khsjh
closed
5 months ago
0
How to generate the fastq input for juicer through .allValidPairs file
#578
lvqiang0120
opened
1 year ago
0
Bowtie2 alignment step1 ...
#577
yalongan
opened
1 year ago
0
digest_genome.py
#576
yalongan
closed
5 months ago
0
non-model species
#575
andreaschavez
opened
1 year ago
3
Omni-C library
#574
CaroB-M
opened
1 year ago
0
issue with chimera and primer design
#573
ahorvath
opened
1 year ago
0
Allele specific analysis - assignment failure
#572
PhrenoVermouth
opened
1 year ago
0
Low alignment rate on Micro-c data
#571
liviu-
opened
1 year ago
0
LIGATION_SITE
#570
tan5251
opened
1 year ago
0
Run HiC-Pro 3.1.0 mkdir: missing operand Try 'mkdir --help' for more information.
#569
lkiko
opened
1 year ago
0
remove uninterested chromosome information such as chrMT, chrX and chrY
#568
Zheng19w
opened
1 year ago
0
make configure
#567
wangguiqian
opened
1 year ago
0
trans G1-G2 contacts in allele specific mode
#566
hbordele
opened
1 year ago
0
Singularity image link
#565
mangiruben
opened
1 year ago
6
Bowtie2 alignment step1 ... [main_samview] fail to read the header from "-". Exit: Error in reads alignment - Exit
#564
elenadelpup
opened
1 year ago
0
Do not know the list of restriction fragments/enzymes(s) INFO, while download Hi-C data from SRA.
#563
QianghuiZhu
opened
1 year ago
0
Combining multiple allvalidpairs files into a single file
#562
Biswa2410
opened
1 year ago
0
Chloroplast and Mitochondrial DNA
#561
elenadelpup
opened
1 year ago
0
Testing data
#560
pocession
opened
1 year ago
0
config-system.txt'. Stop.
#559
lanyunxin
opened
1 year ago
0
HiChIP with MNase
#558
Soh-hyon
opened
1 year ago
0
sparseToDense.py error
#557
aaannaw
opened
1 year ago
2
Con't find the file '-lgcc_s' when I typing the command 'make install'
#556
H1207953831
opened
1 year ago
0
no
#555
BenxiaHu
opened
1 year ago
0
HiC-Pro installation
#554
TakatoG
closed
1 year ago
1
Hic Pro 2.11.1 compilation error
#553
DaShaCHun123
opened
1 year ago
0
make: *** [bowtie_global] Error 1
#552
xma82
opened
1 year ago
0
mHi-C vs. HiC-Pro RM_MULTI = 0
#551
pna059
opened
1 year ago
0
Searching for the wrong suffix *.fastq.fastq
#550
yeroslaviz
opened
1 year ago
3
explanation of statistics
#549
Phlya
opened
1 year ago
0
how to generate UCSC hic?
#548
gaofan83
closed
1 year ago
1
Chromatin order is wrong in the HiC-Pro output
#547
xyljoslin
opened
1 year ago
0
fastq adapter trimming
#546
yinshiyi
opened
1 year ago
0
Perform hichip and found that high trimmed map rate to 50%
#545
chase2biye
opened
1 year ago
3
How to create a valid bam file without duplication ?
#544
yshcai
opened
1 year ago
0
n
#543
BenxiaHu
opened
1 year ago
0
/tmp/hicmk.4655:68: *** missing separator. Stop.
#542
L1angyan
closed
1 year ago
1
Error with iced normalization
#541
hillbluff
closed
1 year ago
1
Error after quality checks make: *** [/usr/local/bin/HiC-Pro_2.11.4/bin/../scripts//Makefile:181: hic_qc] Error 1
#540
raquelsofi
closed
2 years ago
1
Error at the start of HiC-Pro: failed to create symbolic link
#539
kaivalya-lgr
opened
2 years ago
0
Bowtie2 "directory" error?
#538
jaclyn-marie
closed
1 year ago
0
selecte restriction enzyme
#537
naturalstay
opened
2 years ago
0
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