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nservant
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HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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Running Hi-C pro yields no results
#400
yamzaleg
closed
3 years ago
20
make: *** [bowtie_local] Error 1
#399
YiweiNiu
closed
3 years ago
2
find: File System Loop Detected
#398
Jacobvazquez18
closed
3 years ago
2
Reads not pairing before mapping
#397
mmilevskiy
closed
3 years ago
9
plot_pairing_portion.R issue
#396
kuba11
closed
3 years ago
5
Low level of trimmed reads and alignment rate
#395
zhang-jiankun
closed
3 years ago
2
What Do I use for Restriction Fragment Digestion if using DNASE
#394
Max-Highsmith
closed
3 years ago
2
Can't Install HiC-Pro
#393
Jacobvazquez18
closed
3 years ago
6
#HiC-Pro3 #samtools error samtools sort: fail to open "***.bam" Too many open files
#392
Dawe890311
closed
3 years ago
2
Devel
#391
nservant
closed
3 years ago
0
Issue with bowtie2
#390
ckntav
closed
3 years ago
2
error while running HiCPro2FitHiC.py
#389
priyatamapandey
closed
3 years ago
23
Error in multiplot
#388
rosaak
closed
3 years ago
2
sparseToDense.py error
#387
sunthink
closed
3 years ago
2
running the singularity image on a SLURM cluster with CentOS
#386
tanasa
closed
3 years ago
2
regarding HiC data in IMR90
#385
tanasa
closed
3 years ago
2
build_raw_maps error
#384
hilaryhy
closed
3 years ago
1
../\scripts//Makefile:194: ice_norm] Error 139
#383
zhanwen-cheng
closed
3 years ago
3
Run HiC-Pro smoothly but can't generate any statistical figures in hic_results/pic/
#382
lugols
closed
3 years ago
10
error in global alignment step
#381
HangweiXi
closed
3 years ago
1
Problems with Singularity definition file
#380
fbartusch
opened
3 years ago
2
sparseToDense.py error
#379
Ferossitiziano
closed
3 years ago
1
Normalisation of contact matrix by sequencing depth
#378
Ferossitiziano
closed
3 years ago
5
mapped_2hic_fragments.py
#377
Ferossitiziano
closed
3 years ago
2
Read block operation failed in only one read pair
#376
Rayko87
closed
3 years ago
3
how to prevent parallel submission from removing LD_ environment variables
#375
sckinta
closed
3 years ago
1
Urgent: Installation Issue
#374
sanchari24
closed
3 years ago
2
doc Juicer
#373
nservant
closed
3 years ago
0
Please,how to download HiC-pro(3.0.0) for python3.8
#372
zk469334537
closed
3 years ago
1
No matrices in ice folder
#371
ahmadammarmalik
closed
3 years ago
3
Run parallel HiC-Pro without a scheduler
#370
fanc-WU
closed
3 years ago
1
Forward and reverse reads not paired.
#369
linshengnan2020
closed
3 years ago
23
build_raw_maps error
#368
shiyi-pan
closed
3 years ago
5
Allele-specific - markAllelicStatus.py issue for HiC-Pro_2.11.4
#367
StephF-1130
closed
3 years ago
2
Error about bx-python during the installation of HiC-Pro
#366
Jerry-Zhao
closed
3 years ago
2
Question about .matrix file format
#365
rachelzhu123
closed
3 years ago
1
the input file for diffhic
#364
QianzhaoJ
closed
3 years ago
1
Allele specific analysis
#363
AROMDLAB
closed
3 years ago
8
allvalidpairs to bedpe format
#362
KunFang93
closed
4 years ago
2
Installation in conda environment, bx.python error, PyUnicodeUCS2_FromStringAndSize
#361
mdozmorov
closed
4 years ago
8
Nothing to align ! Please check input files and R1/R2 extension
#360
mdozmorov
closed
4 years ago
1
Fix iced.__version__ error
#359
mdozmorov
closed
3 years ago
1
m
#358
BenxiaHu
closed
3 years ago
1
Merging replicates and downstream analysis with HOMER
#357
sanchari24
closed
3 years ago
3
running on cluster Slurm
#356
ahmedabbas81
closed
3 years ago
2
No hic_results/data/
#355
rob123king
closed
4 years ago
1
Ice normalization failed
#354
AhlemBoudell
closed
3 years ago
2
NameError: name 'or1_fragname' is not defined
#353
jeffpkamp
closed
4 years ago
3
How could run "singularity exec" in parallel mode?
#352
shanwai1234
closed
4 years ago
0
extract_snp.py does not return phased snps?
#351
shanwai1234
closed
3 years ago
2
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