issues
search
nservant
/
HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
Other
382
stars
183
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Unable to get the QC Plots
#350
ancient-learner
closed
3 years ago
1
Pipeline Fails while ICE Normalization
#349
rkash
closed
3 years ago
2
Error during ICE normalization
#348
mxw010
closed
3 years ago
1
Error during pairing after alignment
#347
divyanandu
closed
4 years ago
8
*.hic to HiC-Pro
#346
will-NYGC
closed
3 years ago
1
m
#345
BenxiaHu
closed
3 years ago
1
[DOC] update FAQ
#344
zpliu1126
closed
4 years ago
0
'inputs not found'
#343
malina-dva
closed
3 years ago
7
singularity image not finding ggplot
#342
trum994
closed
3 years ago
3
Bias file
#341
BenxiaHu
closed
3 years ago
1
make: *** [hic_qc] Error 1
#340
DRosen1996
closed
4 years ago
4
hic
#339
DRosen1996
closed
4 years ago
0
Is there any description about the .allValidPairs?
#338
LeopoldC
closed
4 years ago
3
convert iced matrix to cool
#337
BenxiaHu
closed
3 years ago
3
activate verbose mode in iced asap
#336
nservant
opened
4 years ago
0
what is the .FiltPairs files about?
#335
lanliting
closed
4 years ago
6
README.md broken singularity link
#334
sprouffske
closed
4 years ago
1
Trooble to launch HiCpro from building raw map step
#333
El-Castor
closed
4 years ago
3
High percentage invalid pairs
#332
Ferossitiziano
closed
4 years ago
1
SyntaxError: invalid syntax when running split_sparse.py
#331
chenggang108
closed
4 years ago
1
ValueError: numpy.ufunc has the wrong size
#330
lanliting
closed
4 years ago
1
Error with step2 his-pro on allele specific mode. Please help
#329
StephF-1130
closed
4 years ago
4
multiple restriction sites in cutsite_trimming
#328
lanliting
closed
4 years ago
5
'Pre-flight' checks
#327
biobenkj
closed
4 years ago
6
bowtie_global Error 1
#326
Ferossitiziano
closed
4 years ago
25
P2 p3
#325
AnthonyJaquaniello
closed
4 years ago
0
Run quality checks failed
#324
AhlemBoudell
closed
4 years ago
11
FIX ice is now picked up globally and not locally
#323
NelleV
closed
4 years ago
9
Different resolution from validpairs
#322
Rayko87
closed
4 years ago
14
fq extension handling for inter-replicat
#321
AnthonyJaquaniello
closed
4 years ago
0
Revert "delete DistType in header"
#320
nservant
closed
4 years ago
0
Running HiC pro in both modes
#319
AhlemBoudell
closed
4 years ago
1
error in install HiC-Pro-2.11.1
#318
shiyi-pan
closed
4 years ago
5
Devel
#317
AnthonyJaquaniello
closed
4 years ago
0
the error everyone got but with different causes
#315
AhlemBoudell
closed
3 years ago
7
Update hicpro2higlass.sh => for cooler zoomify
#314
LeopoldC
closed
4 years ago
1
HiC-Pro use with non-reference genomes
#313
joeplanta
closed
4 years ago
2
/scripts//hic.inc.sh: No such file or directory
#312
harbourlab
closed
4 years ago
2
Read file extension checking
#311
AnthonyJaquaniello
closed
4 years ago
1
Error in HiC-Pro installation
#310
mestill7
closed
4 years ago
0
Error at contact maps step
#309
virginiascarlett
closed
4 years ago
3
Problem with merging reads
#308
sanchari24
closed
4 years ago
17
HiC-Pro does not perform deduplication even when RMDUP=1 is set in the config file unless the 'merge-persample' option is used, but this is not run by default and the option to do is not documented on the github page
#307
gbonora
closed
4 years ago
2
mapped_2hic_fragments possible memory issue
#306
auberginekenobi
closed
4 years ago
5
How to use HiTC to scaffold genome, general methodology after HiC-Pro
#305
rob123king
closed
4 years ago
2
ICE normalisation step fail
#304
rob123king
closed
4 years ago
6
how to run -s ice_norm command directly from .matrix
#303
KunFang93
closed
4 years ago
4
*DEpairs or the *SCpairs files
#302
francisfa
closed
4 years ago
2
Error in hicpro2juicebox.sh process
#301
clementmo
closed
3 years ago
1
Error for hicpro2juicebox.sh processing. Help
#300
clementmo
closed
4 years ago
1
Previous
Next